| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1951 |
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| Symbol | |
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| ID | 5197182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2184651 |
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| End bp | 2186093 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640581496 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001262449 |
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| Protein GI | 148554867 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAGGA TCGCCATGCT GGCGCTGCTG ATGACCAGCG CCTGTTCGAT GAACCCGCGG
CTCGATATCC CGAAGCCGCC GGTCGCGACC CACTATCCCG ACGCGACGGC GGCGGAGCCG
GCGAGCGCCG CCGCGATCGA CTGGCGGACG ATGTTCGGCG ACCCGCGCCT CCAGGCGCTC
GTCGACCTGG CGCTGGCCAA CAATCGCGAC CTGCGTGTCT CGACGCTCAA CGTCGAGGCG
GCGCGCGCCC AGTTCCGGGT GGCGCGCGGG GCGATGCTGC CGCAGGTCGA CGCCAACGGC
TCCTATACCC GCCAGCGCAT CCCGACGAGC ACGGCGTCGG CGGGGATCGG CGGGGCGACC
GGCGGCGGCA CCGGCGCGGG CGCGCCGAGC GGGTTCGAGT TCGGCCAATA TTCGGCCAAT
GCCGCGCTCA CCAGCTTCGA GATCGACCTG TTCGGCCGGC TCCGCTCGCA GAGCCAGGCG
GCGTTCGAGC GCTATCTGGC GAGCGACGAG GGCCGCCGTT CGGCGCGGAT CGCGCTGATC
GGGTCGGTGG TCGACGCCTA TCTGGCCGAA CGGCTCGCCG CCGAGCAGCT CGCGCTGACC
GAGCGGACGA TGGCCGACTG GAACAGCTCG CTCGACATCA CCCGCCGCCA GCACGAGGCG
AAGCAGGTCA GCGGGCTCGA ACTGGCGCAG GCCGAGGGGC AGGTCCAGCA GGCGGCGGCC
GACCTCGCCG CCGGCCAGCG GGCGCTGGCG CAGGCGGGCA ACGCTCTGCA ACTGCTGGTC
GGCGCGCCGA TCCCGGCGGA CCTGCCGGCG CCGATCCCGC TCGCCGACCA GCCGATCATG
ACCCAGCTTC CGGCCGGGCT GCCGTCCGAC CTGATCGCCA ACCGGCCCGA CATCCGTCAG
GCCGAGCGCG AGCTGGTCGC CGCCAATGCC GATGTCGGTG CGGCGCGCGC GGCCTTCTTC
CCGCGCCTGT CGCTGACCGG GCTGTTCGGC TTCACCAGCC TGGCGTTCGA CGACCTGTTC
AAGGGCGACA ATCGCAGCTG GTCCTTCACC CCGCAGATCA GCCAGCCGAT CTTCCGGGGC
GGCAGCCTGC GCGGCGAGCT GCGGCTCGCC AAGGTGCAGA AGTCGATCGC GATCGCCAAT
TACGAGAAGG CGATCCAGAC CGGCTTCCGC GAGGTCGCCG ACGGTCTGGC CGGCCGCGCC
ACTTTTGCGC GCCAGCTCGA TGCCCAGCGC AAGGCGGTCG ATGCCGCCGA GCGGCGCGCG
CGGCTGTCCG ACATGCGCTA CCGCGTCGGC TTCGACAGCC GGCTCGAGCT GCTCGACGCG
CAGCGCAGCG AATATGCGGC GCAGCAGGCG ATGCTGGAAC TGCGGCGGCA GGAGCTGTCC
AGCGCGACCG GGCTCTACCG GGCGCTGGGC GGCGGGGACG AGGACCGGAC GCCGCGCAAA
TAG
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| Protein sequence | MRRIAMLALL MTSACSMNPR LDIPKPPVAT HYPDATAAEP ASAAAIDWRT MFGDPRLQAL
VDLALANNRD LRVSTLNVEA ARAQFRVARG AMLPQVDANG SYTRQRIPTS TASAGIGGAT
GGGTGAGAPS GFEFGQYSAN AALTSFEIDL FGRLRSQSQA AFERYLASDE GRRSARIALI
GSVVDAYLAE RLAAEQLALT ERTMADWNSS LDITRRQHEA KQVSGLELAQ AEGQVQQAAA
DLAAGQRALA QAGNALQLLV GAPIPADLPA PIPLADQPIM TQLPAGLPSD LIANRPDIRQ
AERELVAANA DVGAARAAFF PRLSLTGLFG FTSLAFDDLF KGDNRSWSFT PQISQPIFRG
GSLRGELRLA KVQKSIAIAN YEKAIQTGFR EVADGLAGRA TFARQLDAQR KAVDAAERRA
RLSDMRYRVG FDSRLELLDA QRSEYAAQQA MLELRRQELS SATGLYRALG GGDEDRTPRK
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