| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1948 |
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| Symbol | |
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| ID | 5199062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 2181496 |
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| End bp | 2183166 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640581493 |
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| Product | general substrate transporter |
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| Protein accession | YP_001262446 |
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| Protein GI | 148554864 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.83327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGACG GGTCGGGTAC GGAACTGCCG AAGCACCACA GGGCGACGCA GAACGAGAAG
CTGGTGATCG CCGCCTCGTC GCTGGGCACG GTGTTCGAAT GGTATGATTT CTACCTCTAC
GGCCTGCTCG CCACCTTCAT CAGCAGCCAG TTCTTCTCGG GCGTCAACGA GACGACCGGC
TTCATCCTGG CGCTGGCCGC CTTCGCGGCG GGCTTCGCGG TGCGGCCGTT CGGCGCGCTC
GTCTTCGGGC GGATCGGCGA CCTGGTCGGC CGCAAGAACA CCTTCCTGGT GACGATGGCG
ATCATGGGCC TGTCGACCTT CGCGGTCGGC CTGCTGCCCT CCTATGCCCA GATCGGCGTC
GCGGCGCCCG TCATCCTGGT CGGGCTGCGG CTGCTCCAGG GGCTGGCGCT CGGCGGCGAA
TATGGCGGGG CGGCGACCTA TGTCGCCGAA CATGCGCCCA ACAACCGGCG CGGCCTCTAT
ACCAGCTGGA TCCAGACCAC CGCGACGCTC GGCCTGTTCG CGGCGCTGCT GGTGGTGATC
GGGGTGCGCC GGCTGATGGG TGAGGACGGC TTCGCCGACT GGGGCTGGCG GGTGCCCTTC
CTCGTCTCGA TGATCCTGCT GCTGGTGTCG ATGTGGATTC GCCTGCAGCT GGCCGAAAGC
CCCGTCTTCC AGAAGATGAA GGACGAGGGC AAGACCTCCA AGGCCCCGCT GACCGAGGCG
TTCGGCCGCT GGGGCAACCT GCGCTGGGTG CTGGTCGCGC TGTTCGGCGC GGTCGCGGGC
CAGGCGGTGG TCTGGTACAC GGGCCAGTTC TACGCGCTGT TCTTCCTGGA GAAGACACTC
AAGGTCGACG GCGCCACCAC CAACGTCCTG ACCGCGATCG CACTCGCCAT CGCGACGCCC
GCCTTTGTCT TCTTCGGCTG GCTGTCGGAC CGGATCGGGC GCAAGCCGAT CATCCTGACG
GGCTGCGCGC TCGCCGCGAT CGGCTATTTC CCGCTGTTCA GCGCGCTGAC CGTCGCCGCC
AACCCCGCCC TGGCCCATGC CCAGGCGATC GCGCCGGTCG CGGTGGTCGC CCATGGCGAC
GACTGCTCGG TCCAGTTCGA TCCGATCGGC AAGAACCGGT TCGACAGCCG GAGCTGCGAC
ATCGTCAAGG CGTTCCTCGC CAAGGGCGGG GTCAGCTACG CCAATGTCGA GGCACCGGCG
GGCACGATCG CGCAGGTGCG GATCGGCGAG CGGACGATCG CCGCGCCCGA CCCCGCCACC
GTCTTCGGCG CGGCGCGCAA GGAGGCGATC GCGGCGTTCC AGGAAGAGAC CGGCGCCGCG
CTGAAGGCCG CCGGCTACCC CGCTTCGGCC GATCCGGCGG CGATCGACAC AGTGATGGTG
GTGGCGATCC TGACCGTGCT CGTGCTGCTG GTGACGATGG TCTACGGCCC GATCGCGGCG
CTGCTGGTCG AGCTGTTCCC CAGCCGCATC CGCTATACGT CGATGTCGCT GCCCTACCAT
ATCGGCAATG GCTGGTTCGG CGGCTTCCTG CCGACGATCG TCTTCGCGAT GGTCGCGGCG
ACCGGGGATA TCTATTACGG GCTCTGGTAT CCGATCATCG TCGCGGCGGC GACAGTCGTG
ATCGGGCTGG TCGCGCTGCC GGAAACCGCG CGGCGCGACA TCGACCAGTA A
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| Protein sequence | MTDGSGTELP KHHRATQNEK LVIAASSLGT VFEWYDFYLY GLLATFISSQ FFSGVNETTG
FILALAAFAA GFAVRPFGAL VFGRIGDLVG RKNTFLVTMA IMGLSTFAVG LLPSYAQIGV
AAPVILVGLR LLQGLALGGE YGGAATYVAE HAPNNRRGLY TSWIQTTATL GLFAALLVVI
GVRRLMGEDG FADWGWRVPF LVSMILLLVS MWIRLQLAES PVFQKMKDEG KTSKAPLTEA
FGRWGNLRWV LVALFGAVAG QAVVWYTGQF YALFFLEKTL KVDGATTNVL TAIALAIATP
AFVFFGWLSD RIGRKPIILT GCALAAIGYF PLFSALTVAA NPALAHAQAI APVAVVAHGD
DCSVQFDPIG KNRFDSRSCD IVKAFLAKGG VSYANVEAPA GTIAQVRIGE RTIAAPDPAT
VFGAARKEAI AAFQEETGAA LKAAGYPASA DPAAIDTVMV VAILTVLVLL VTMVYGPIAA
LLVELFPSRI RYTSMSLPYH IGNGWFGGFL PTIVFAMVAA TGDIYYGLWY PIIVAAATVV
IGLVALPETA RRDIDQ
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