| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1935 |
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| Symbol | |
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| ID | 5200948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 2168243 |
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| End bp | 2169625 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640581480 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001262433 |
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| Protein GI | 148554851 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.18016 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCACA ATATGAATCC CGGCGCGCCC TGGCGTACAG AGGCGCGCGC GCTGCTGTCG
CTCGCCATGC CGCTGGTGAT CGGCAATCTC GGCTGGTCGG CGATCGCGGC GACCGACCTG
GTGCTGCTCG GCCGGCTCGG CCCCGACGCG GTCGCGGCGG GATCGCTCGC GCTCAACCTC
TACCAGGCCT TCCTGGTGTT CGGCATCGGC CTGACCACCG CCGCGTCGCC GCTGATCGCC
AGCGAGCGCG GCCGCCGGCT CCACTCGGTC CGCGACATCC GCCGCACCGT CCGCCAGACC
ATATGGGCGG CGGCGATCCT CTGCCTGCCG GCCTGGGCGC TGCTGTGGAA TGCCGAGCCG
ATCCTGATCC TGATCGGCCA GGACCCCGAA TTGTCGGCGC AGGCGGCGAC GCTGATCCAC
GCGCTGCAAT GGGGCCTGCT GCCCTATTTC GTCTTCCTGG TGCTGCGCAA CTATGTGTCG
GCGCTCGAAA AGCCGATCTG GGGCGTGATC GTCACCCTCG CGACGGTGCC GTTCAATGCG
CTGGCGGGCT GGGTCCTGAT CTTCGGTCAT TTCGGCTTTC CCGCGATGGG GCTGCACGGC
GCGGGGATCG CCAGCCTGCT GACGTCGATC TTCATGGGCG TGGGCATGGC GCTGGTGGTG
ACGATGCATC GCCGGTTCCG CCGCTACCAC CTGTTCGGCC GCTTCTGGGT CGCCGACTGG
AGCCGGCTGC GCACCGTCTG GAGGATCGGC CTGCCGATCG CCTTCACCGT CGGCTTCGAG
GTGACGGTGT TCAATGCGGC GGTGTTCCTG ATGGGCCTGA TCGGCCGCGC CGAACTGGCC
GCCCATGCCG TGGCGATCCA GATCGCCGCG CTGTGCTTCA TGGTGCCGAT GGGGATCGGC
CAGGCCGCCA CCGTGCGGGT CGGCTATGCC CATGGCCGGC GCGACCGGGC GGCGATCGGC
CGCGCCGGCT GGCTCGCGCT CGGCCTCGGC ACCGCCTTCG CCGTCGGCAC CGCGACCCTG
CTGATCACCA TCCCGCGCAC CCTGATCGGC GGCTTCATCG ATCTCGACGT GCCCGCCAAC
GCGCCGGTGA TCGGCTATGC CATATCCTTC CTGGCGATCG CCGCGCTGTT CCAGCTCGTC
GACGCCACCC AGGCGATCGG CGCCGGCGTG CTGCGCGGAT TGCAGGACAC GCGCATGCCG
ATGATCTTCG CCGCGATCGG CTATTGGGTG ATCGGCATCG GCACCGGCAC GATCCTCGCC
TTCCCGATGA AGATGGAGGG CGTCGGCATC TGGCTGGGAC TCGCCACCGG GCTCGGCGTG
GTGGCGGTGC TGCTGGTCTG GCGCTGGGCG CGGCGCGAGC GGCTGGGCCT GCTCCCGACC
TGA
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| Protein sequence | MDHNMNPGAP WRTEARALLS LAMPLVIGNL GWSAIAATDL VLLGRLGPDA VAAGSLALNL
YQAFLVFGIG LTTAASPLIA SERGRRLHSV RDIRRTVRQT IWAAAILCLP AWALLWNAEP
ILILIGQDPE LSAQAATLIH ALQWGLLPYF VFLVLRNYVS ALEKPIWGVI VTLATVPFNA
LAGWVLIFGH FGFPAMGLHG AGIASLLTSI FMGVGMALVV TMHRRFRRYH LFGRFWVADW
SRLRTVWRIG LPIAFTVGFE VTVFNAAVFL MGLIGRAELA AHAVAIQIAA LCFMVPMGIG
QAATVRVGYA HGRRDRAAIG RAGWLALGLG TAFAVGTATL LITIPRTLIG GFIDLDVPAN
APVIGYAISF LAIAALFQLV DATQAIGAGV LRGLQDTRMP MIFAAIGYWV IGIGTGTILA
FPMKMEGVGI WLGLATGLGV VAVLLVWRWA RRERLGLLPT
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