| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1834 |
|---|
| Symbol | |
|---|
| ID | 5196165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2051811 |
|---|
| End bp | 2055326 |
|---|
| Gene Length | 3516 bp |
|---|
| Protein Length | 1171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640581379 |
|---|
| Product | 2-oxoacid ferredoxin oxidoreductase |
|---|
| Protein accession | YP_001262332 |
|---|
| Protein GI | 148554750 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCACCC CCGCCGATCC CGCCGCCGCG GAGCTGCACG ACTATGCGCT GGACGACCGT
TACCGGAGGA CATCCGGCAG GGTCTATCTG TCGGGGTCGC AGGCGCTGGT CCGCCTGCCG
ATGCTGCAAC GGGTCCGCGA CCTCGCCGAG GGCCGCAACA CGGCCGGCTT CATCTCGGGC
TATACCGGCT CGCCGCTCGG CGGATACGAC ACCGCGCTGA AGGCGGCGAA GAAGGAGCTC
GACGCGCACC ACATCGTCTT CCAGCCGGGC CTCAACGAGG AGCTCGGCGC GACGGCGGTG
TGGGGATCGC AGCAGACCGA CCTGTTCGGC GAGGCGCGCT ACGACGGGGT GTTCGCGCTG
TGGTACGGCA AGGGCCCCGG CCTCGACCGC GCCGGCGACG CGATCAAGCA CGGCAATTAT
TCGGGATCGT CGAAGCATGG CGGGGTGCTC GTCCTCGCCG GGGACGATCA TGGCGCGAAG
TCGTCGACGA CCGCGCACCA GAGCGACCAC GGCTTCATCC ATTACGGCAT CCCCTATTTC
AATCCGGCCT CGGTGCAGGA CTATCTCGAC TACGGCCTCC ACGGCATCGC GCTGTCGCGC
CATGCCGGCT GCTGGGTCGG CATGAAATGC GTGACCGACA CGATCGAAAG CTCGGCGTCG
GTCGACATCT CCGCCATGGA GGCGCCGATC CTGCCGCCCG AGGCGGAGGC GCAGGGCCAG
GCCGGCCGCA ACGCCCGCTG GGGCGTCCAC CCCGTCCTTG CCGAGCAGTC GCATTACCAG
AGGCGCCTTC CGGCGGTGCA GGCCTTCGTC AAGGCGAACC GGCTCAACCA TCCGGTGATC
CACGCCGAGG ACGGCCTGCT CGGCATCGTC ACCGGCGGCA AGGCCTGGCT CGACGTGATG
CAGGCGCTGG AGGAGCTGGG CCTCGATCGC GACGGCTGCC GCAGGCATGG CGTCGGCGTC
TTCAAGGTGG CGATGCCCTG GCCGCTCGAA CCCGACCTGA TCGCCGATTT CGCACGCGCC
TATCGGACCA TCCTCGTCGT CGAGGAGAAG CGCCCGATCA TCGAGCAGCA GCTCGCCGGC
CTGTTCGTCA ACGACCGTTC CGCGCCGATC CTGATCGGGA AGAACGACGA GGCGGGATCG
CCGCTGATCC CGTCGGTGGG CGAGCTCAAT GCCCCGCTGC TGGCGGCGGC GATCGGATCG
ACCCTGGCGC GGCTCGGCGC CGGTCCCGGC CCCGCCGCCC GGTCCGCGCC GACCGCGACC
GGCGCCGGAC AGGCCGCCGG CCTCGTCCGC CTGCCGAGTT TCTGCGCGGG GTGTCCGCAC
AACGGCTCGA CCCGGGTGCC GCAGGGCAGC GTCGCCTTCG GCGGCATCGG CTGCCACGGC
ATGGCGACCT TCCTGCCCGA GCGGAACACT CCGACGCTGT TCCAGATGGG CGGCGAGGGC
GCGCCGTGGA TCGGCCTGTC GCCCTTCACC GAACGGAAGC ACATCTTCCA GAATCTCGGC
GACGGCACCT ATTATCATTC GGGCCTGCTC GCGATCCGCG CCGCCGTCGC GGCGAAGGTC
AACATCACCT ACAAGATCCT CGTCAACGAC GCGATCGCGA TGACCGGCGG ACAGGTCATC
GAAGGCAGCG TCCGCGTCGA CGCCCTCACC CGGCAGGTCC ATGCCGAGGG GGTCCGCCGG
ATCGCGGTGG TCAGCGACGA CATCGACAAA TATCGCGCCG GCCATGATTT CGCGCCGGGC
GTCACCATCC ACCATCGCGA CGACCTTGCG GCGGTGCAGG AGGAGCTGAG GGAGGTCGAG
GGCGTCTCGA TCCTGGTCTA CGAGCAATAT TGCGCGACCG AGCTGCGCCG CCGCCGCAAG
CGCGGCAAGG CCGAGGACCC CGACCGCCGC ATCTTCATCA ACCCGCGCGT CTGCGAGGGC
TGCGGCGATT GCGGGGTGCA GTCGAACTGC ATCGCCATCG AGCCGGTCGA GACCGGCTTC
GGACGCAAGC GGCGGATCAA CCAGTCGGCC TGCAACAAGG ATTTCTCCTG CACCAAGGGC
TATTGCCCCA GCTTCGTCAC CGTCCACGGC GCCAAACCGC GCCGGCGCGG CTCCAGCGGT
GCGGCGGCGC TTCCCCCCGC CGCCGCCGAA CTGGCCGCGC GCTTGCCGAC ACCAAAGGTC
GCGCCGGTCG ACGCGCCGTT CAGCCTGCTC GTCACCGGCA TCGGCGGCGC GGGCGTCGTC
ACCGTCGGCG CGCTGCTGGG CATGGCGGCG CACCTCGAAG GCAAGGGATG CTCGGTGCTC
GACGTCGCCG GGCTCGCCCA GCGCAACGGG CCGGTGACCA GCCATGTCCG CATCGCCCGG
CGGCCCGAGG ACCTGCACGC GACGCGCATC GTCACGGCGG ACCTCGTCCT CGGTTGCGAC
ATCGTCGTGA CGGCGGGACA GGAGGCGACG TCGAAGATGG TGGCGGAGCG GAGCCGTGCG
GTGGTCAACA CGCGGGTGGC GCCGACCTCG GCCTTCGCGA GCAATCCCGA TCTCAACCTC
GACGCGGGCG CCATGGTCGA TCGGATCCGC GCGAGCCTGG GTGATGATGC GAACGCCGCC
TTCGTCGACG CCGGCAGGCT CGCCGACGCG CTGATGGGCA ACGAGATCGC CACCAACCTC
TTCCTGGTCG GCTATGCGAT CCAGAAGGGC TGGATGCCGG TCGGGATCGA CAGCGTGCTG
CGCGCGATCG ACCTCAACGG CGTCAGCGTC GAGATGAACC GGACCGCGCT GCTCTGGGGC
AGGATCGCCG CGGAGGACCT CGCCGCCGTC CAGGCCTGCG CGTTCGGCGT CGGCAGTGGC
GAGGGGGAGG CCCTTCCGCC GCAGGAGGAG GCACTCGGCG ATCTCGTCGC GCGGCTCGCG
GCGGACCTGG CCGCCTATCA GGACGCGGGC TATGCGCGCC GCTATCGCGC GCTGGTCGCC
CGCGTCCGAT CGGCCGACGG CGGCTTCCCG GAGCGGCAGG CGGCGCTGAG CAAGGCGGTG
GCGCGCTATC TCCACAAGCT GATGGCCTAC AAGGACGAAT ATGAGGTCGC CCGGCTCTAT
TCGGACGGCG CCTTCCGGCG CGCGCTGGAG GAGGCGTTCG AGGGCGACCT GCGGCTCGAA
TTCCACATGG CGCCGCCGCT GCTCCAGAAG CGCGACCCGC GCACCGGCCG CTACCGGAAG
CGGACCTTCG GACGCGGCAC GATGCGCCTC TACGCGCTGC TCGCAAAGCT CAAATTCCTG
CGCGGCACGC CGTTCGACCC ATTCGGCCGC AGCGCCCACC GCAGGGAGGA GCGCGCGCTG
ATCGTCCATT ATGAAGGGCT GATCGAGGAG GTGCTGCGCC ATCTCGACGC GGAGACCTAC
GACCTCGCGG TCGAGATCGC CTCCTATCCC GAGCTGATCC GCGGCTACGA CAGCGTCAAG
GACGAGCATC TCGGACGGGC GCGGGCACGG CTGGAGGAAC TGCGGCAACG CCTGCTCGAT
CCCGCCGCCG CGCCGCGCGC GCTCGAAACC GCCTGA
|
|---|
| Protein sequence | MTTPADPAAA ELHDYALDDR YRRTSGRVYL SGSQALVRLP MLQRVRDLAE GRNTAGFISG
YTGSPLGGYD TALKAAKKEL DAHHIVFQPG LNEELGATAV WGSQQTDLFG EARYDGVFAL
WYGKGPGLDR AGDAIKHGNY SGSSKHGGVL VLAGDDHGAK SSTTAHQSDH GFIHYGIPYF
NPASVQDYLD YGLHGIALSR HAGCWVGMKC VTDTIESSAS VDISAMEAPI LPPEAEAQGQ
AGRNARWGVH PVLAEQSHYQ RRLPAVQAFV KANRLNHPVI HAEDGLLGIV TGGKAWLDVM
QALEELGLDR DGCRRHGVGV FKVAMPWPLE PDLIADFARA YRTILVVEEK RPIIEQQLAG
LFVNDRSAPI LIGKNDEAGS PLIPSVGELN APLLAAAIGS TLARLGAGPG PAARSAPTAT
GAGQAAGLVR LPSFCAGCPH NGSTRVPQGS VAFGGIGCHG MATFLPERNT PTLFQMGGEG
APWIGLSPFT ERKHIFQNLG DGTYYHSGLL AIRAAVAAKV NITYKILVND AIAMTGGQVI
EGSVRVDALT RQVHAEGVRR IAVVSDDIDK YRAGHDFAPG VTIHHRDDLA AVQEELREVE
GVSILVYEQY CATELRRRRK RGKAEDPDRR IFINPRVCEG CGDCGVQSNC IAIEPVETGF
GRKRRINQSA CNKDFSCTKG YCPSFVTVHG AKPRRRGSSG AAALPPAAAE LAARLPTPKV
APVDAPFSLL VTGIGGAGVV TVGALLGMAA HLEGKGCSVL DVAGLAQRNG PVTSHVRIAR
RPEDLHATRI VTADLVLGCD IVVTAGQEAT SKMVAERSRA VVNTRVAPTS AFASNPDLNL
DAGAMVDRIR ASLGDDANAA FVDAGRLADA LMGNEIATNL FLVGYAIQKG WMPVGIDSVL
RAIDLNGVSV EMNRTALLWG RIAAEDLAAV QACAFGVGSG EGEALPPQEE ALGDLVARLA
ADLAAYQDAG YARRYRALVA RVRSADGGFP ERQAALSKAV ARYLHKLMAY KDEYEVARLY
SDGAFRRALE EAFEGDLRLE FHMAPPLLQK RDPRTGRYRK RTFGRGTMRL YALLAKLKFL
RGTPFDPFGR SAHRREERAL IVHYEGLIEE VLRHLDAETY DLAVEIASYP ELIRGYDSVK
DEHLGRARAR LEELRQRLLD PAAAPRALET A
|
|---|
| |