| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1376 |
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| Symbol | |
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| ID | 5200678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1519174 |
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| End bp | 1519926 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640580922 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001261878 |
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| Protein GI | 148554296 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0453774 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGAA CGGGATGGGG GCGCATAGCG GCGCGGCGCC CGAAAGGCAA GGAAGCTCTT
TGCAGGCGGG GCCGGCCCGT GCAAGGGAGG CGCGTGCTAG ACGAACATAT CCTCTTCATC
GACGGCGAGG CGATGGTGAT CGACAAGCCT TCGGGCCTGC CGGTCGATCC GCCGCGCGAC
GGCAGCATCA GTCTGGAGAA CCACCTCCAG TCGCTGTCCT TCGGTTTCAA GCGCTGGCCG
AGCGCGGTGC ACCGGCTGGA CCGCGACACC TCGGGCTGCC TGCTGCTGGC GCGCAATCCC
AAGGCGCACA AACGCTATGC GCTCGCCTTC GAGGAAGGGA AGGTCGAGAA GACCTATCTT
GCCATCCTCG ATGGCATTCC GGCGCAGGAG AGCGGCCTGG TCGACCTGCC GCTCGCCAAG
ATCTCGACCC GCGAGGCTGG TTGGCGGATG GTCGGCGACC CCAGGGGCAA GCCCGCCACC
ACGGCCTGGC GCGTCGTCGC GACCGTCGAC GGACGCGCGC TGGTCGAGTT CCGGCCGACG
ACCGGTCGCA CCCACCAGAT TCGCGTGCAC GCCGCGACCG GCATCGGCCT GCCGATCCAT
GGCGACCCGG TTTACGGCAG GGAAGGGCAG GCCGGAGTGA CCTTGCTCCA TGCCTCCGCC
CTGGTCGTCC CGCGCGAAGG TAAGAACCCG ATCGAGGCGA AGGCGCCGCT TCCCGCGCGT
TTCACCGCGC TGGGCTTCGC CGAACCGGCC TGA
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| Protein sequence | MTGTGWGRIA ARRPKGKEAL CRRGRPVQGR RVLDEHILFI DGEAMVIDKP SGLPVDPPRD
GSISLENHLQ SLSFGFKRWP SAVHRLDRDT SGCLLLARNP KAHKRYALAF EEGKVEKTYL
AILDGIPAQE SGLVDLPLAK ISTREAGWRM VGDPRGKPAT TAWRVVATVD GRALVEFRPT
TGRTHQIRVH AATGIGLPIH GDPVYGREGQ AGVTLLHASA LVVPREGKNP IEAKAPLPAR
FTALGFAEPA
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