Gene Swit_1296 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1296 
Symbol 
ID5200790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1447607 
End bp1448998 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content68% 
IMG OID640580843 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001261799 
Protein GI148554217 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGACT ATGATTTCGA CGTGATCGTC ATCGGCGCGG GTCCCGGCGG CTATGTCGCC 
GCGATCCGCG CGGCGCAACT CGGCCTCAGG ACCGCCTGCG TGGAGAGCCG CGAGACGCTC
GGCGGCACCT GCCTCAACGT CGGTTGCATC CCGTCCAAGG CGATGCTCCA CGCGTCCGAG
CTCTATGACG AGGCCGCCAG CGGCAAGCTC GCCAAGCTCG GCATCAAGAC CCAGGTCGAG
CTCGATCTCG ACACGATGCA CGGCCAGCGC CGCGACGCGG TCAAGGGCCT GACCGGCGGC
ATCGAGTTCC TGTTCAAGAA GAACAAGGTC GAATGGCTGA AGGGCCATGC GGCGTTCACC
GGCAAGGACA GGATCGACGT CGCGGGCAAG AGCTACCGCG CCCGGAACAT CGTCGTCGCC
ACCGGCTCCA GCGTCACCCC GCTGCCGGGC GTCGAGATCG ACGAGAAGGT GGTCGTCTCC
TCGACCGGCG CGCTCGAGCT GGCGAAGGTC CCCGGCCATC TGGTCGTGAT CGGCGGCGGC
GTGATCGGCC TGGAGCTGGG CTCGGTCTGG AAGCGCCTCG GCGCCAAGGT CACCGTCGTC
GAGTTCCTCG ACCAGCTGCT GCCCGGCATG GACGGCGAGG TCCGCAAGGA AGCCGCCAAG
ATCTTCAAGA AGCAGGGCAT CGAGCTCAAG CTGTCGACCA AGGTCACCGG CGTCGCCGTC
AAGGGCGGCA AGGCGACCGT CACCGTCGAG CCCGCCGCCG GCGGCGCCGC GGAGACGCTG
GAGGCCGACG CCGTGCTGGT GTCGATCGGC CGCCGCCCGA ACACCGAGGG CCTAGCGCTC
GAAAGGGCTG GCCTGACCGT CAACAAGCGC GGCCAGATCG AGGTCGACCA CGACCTCGCG
ACCGCCGTCC CCGGCATCTG GGCGATCGGC GACGTCGTCC CCGGCCCGAT GCTGGCGCAC
AAGGCCGAGG ACGAGGGCAT CGCCGTCGCC GAGAACATCG CCGGGCTGAC CGGCATCGTG
AACCACGACG TCATCCCCGG CGTCGTCTAC ACCATGCCCG AGATCGCCGG CGTCGGCCTG
ACCGAGGAGG AGGCGAGGGA GCGCGGCGAG GTGAAGATCG GCAAGTTCCC GATGCTCGCC
AATTCGCGCG CCAAGACCAA CCATGAGCCC GATGGCTTCG TGAAGGTGAT CGCCGACGCA
AAGACCGATC GGGTGCTGGG CGTCCACATC ATCGCCTCGG TCGCCGGCAC GATGATCGCC
CAGGCCGCCC AGGCGATGGA GTTCGGCGCG ACCAGCGAGG ACATCGCCTA TACCTGCCAC
GCGCATCCGA CCCATTCGGA AGCGATCAAG GAGGCGGCGA TGGCCGTCAC CGGCAAGCCG
ATCCACATGT GA
 
Protein sequence
MSDYDFDVIV IGAGPGGYVA AIRAAQLGLR TACVESRETL GGTCLNVGCI PSKAMLHASE 
LYDEAASGKL AKLGIKTQVE LDLDTMHGQR RDAVKGLTGG IEFLFKKNKV EWLKGHAAFT
GKDRIDVAGK SYRARNIVVA TGSSVTPLPG VEIDEKVVVS STGALELAKV PGHLVVIGGG
VIGLELGSVW KRLGAKVTVV EFLDQLLPGM DGEVRKEAAK IFKKQGIELK LSTKVTGVAV
KGGKATVTVE PAAGGAAETL EADAVLVSIG RRPNTEGLAL ERAGLTVNKR GQIEVDHDLA
TAVPGIWAIG DVVPGPMLAH KAEDEGIAVA ENIAGLTGIV NHDVIPGVVY TMPEIAGVGL
TEEEARERGE VKIGKFPMLA NSRAKTNHEP DGFVKVIADA KTDRVLGVHI IASVAGTMIA
QAAQAMEFGA TSEDIAYTCH AHPTHSEAIK EAAMAVTGKP IHM