| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1218 |
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| Symbol | |
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| ID | 5199662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1377620 |
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| End bp | 1379080 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640580766 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001261722 |
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| Protein GI | 148554140 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3014] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.411043 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.543681 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACCA TCCATCGGCT GGCGACCGGA ATCGCCGCTT TCTCGTTGTT GTCGCTCGCC
TCCGCCGTCG TGGCGCAGGA TGCGGCCGCC CCTGTCGACC CCGCCGCCGC CAAGGCCGCC
GCGAAGGCGC GGGCCAAGCA GGTCGCGGCC TGGAAGGCGC AATATGGCCC CGGCCCCTAT
CCCGACGAGG TCGAGACCTT CGCCCAGGGC CGGCAGGAGG AACTGCGCGG CTATTATCGC
GTCCTCTATT ATGACGGCGA GCACAACGCC GTGCTCAATT ATGAGCGGCT CGGCCTGCTC
TCGATGGAGC TCGGCTATTA TGGCGACGCC GAGAAGGCGT TCGACGGCGC GCTCGACCGG
ATCGAGGCCT TCTACAACAA GGACAAGCAG GCCGAGAAGG CGACCTCGGC GACGCGGCTC
GAGGTCAACA AGGACTTCAA GGGCGAGCCC TATGAACGGG CGATGGCCTA TTATTATCGC
GGGCTGCTCT ATCTGCGGAA GGGCGACTAC GACAATGCCC GCGCCTCGTT CAAGGCGGCC
GAATATCAGG ACACGGTCTC GGGCGAGGAG AGCTTCCAGT CGGACTTCGC GCTGCTGACC
TATCTGCAGG GCTGGGCGTC GCAATGCGCG GGCGACGGCA GCCAGGCCGC CGACGCGTTC
GAGCAGGCCG CGAAGATCGA TCCCAGGCTC AAGGTGCCGG GGCCCAACGA CAATGTCCTG
GTGCTGACCG AACTCGGCAT CGGCCCGGTC AAGGCGACCG ACGGGCAATA TCAGGAGAAG
CTGGTCTTCC GCCCCGGCGC CGCCATGCCC GAAAATGGCG CGATCGTGAC GCTGGGCGCC
GGCAAGACGA CGCGCGCCTG GCCGCTGACG CCGGCCGCCG ACATCTATAC CCAGGCGTCG
ACCCGCGGCG GCCGGGCGAT CGACGGCATC CTCGACGGCA AGGCCCAGTT CAAGTCCGGG
CTGGAGACGA CCAGCGCTCT CGCCACCACC GTCGGCAGCA GCTTCGCCCA GCAGATGGGC
GGCAATGCCC TCTATGCGCA GGGGATCGGC GCGGCGCTCA GCATGTTCTC CAAGTCGGTC
CGGCCGACCG CCGACACCCG GATGTGGGAC GGCCTGCCGT CGAGCATCAT GGTCGGCACC
ACGCGCTGGG GCGCCGCCGC GCCGGCCGCC GCCGCCGGCA AGGGCAAGAA GCCCGCGCCC
AAGGCTTCGC TGAGCGCCGG CGAGTGGAGC ATGCCGTCGG TCAGCATGAC CTATCGCCAG
GACGACAATG CGCTCGACCT GACGGGGACC AAGCCGATGG CGGCCAGCGC CGGCAAGTGC
GGCATCGTCT GGGCCCGCTC GCGCAGCGTG GCGAGCCTGC CGTCCGAGGC GCCCGGCAAC
AACGCCAAGA TCGCGCTGGC GCGCAAGCGG GACAAGGACG TGTGGGCCAA GGACGAGGCC
TTCCGCGCGA AGCTGCGCTA G
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| Protein sequence | MKTIHRLATG IAAFSLLSLA SAVVAQDAAA PVDPAAAKAA AKARAKQVAA WKAQYGPGPY
PDEVETFAQG RQEELRGYYR VLYYDGEHNA VLNYERLGLL SMELGYYGDA EKAFDGALDR
IEAFYNKDKQ AEKATSATRL EVNKDFKGEP YERAMAYYYR GLLYLRKGDY DNARASFKAA
EYQDTVSGEE SFQSDFALLT YLQGWASQCA GDGSQAADAF EQAAKIDPRL KVPGPNDNVL
VLTELGIGPV KATDGQYQEK LVFRPGAAMP ENGAIVTLGA GKTTRAWPLT PAADIYTQAS
TRGGRAIDGI LDGKAQFKSG LETTSALATT VGSSFAQQMG GNALYAQGIG AALSMFSKSV
RPTADTRMWD GLPSSIMVGT TRWGAAAPAA AAGKGKKPAP KASLSAGEWS MPSVSMTYRQ
DDNALDLTGT KPMAASAGKC GIVWARSRSV ASLPSEAPGN NAKIALARKR DKDVWAKDEA
FRAKLR
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