Gene Swit_1144 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1144 
Symbol 
ID5196356 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1288000 
End bp1289124 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content71% 
IMG OID640580691 
Productsecretion protein HlyD family protein 
Protein accessionYP_001261648 
Protein GI148554066 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR00998] efflux pump membrane protein (multidrug resistance protein A) 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.143245 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.639337 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGACG TCGATCCCCC GAAGACCAGC GCCGATCCCG TCGAGGACAG CGAGAGCGAG 
GCCCGCCGCG AAGCCCGCCT CCGGGCGCGC AAGACCTGGC TGATCCGCTT CGCGATCGGG
CTGGCGGTCG TCGCACTGAT CTTCGGCGCC TGGTACCTGC TGATCGGGCG CAACCATGTC
AGCACCGACA ACGCCTATGT GAATGCCGAG GTGGCGCAGG TCACGCCGCT GATCTCGGCC
CAGGCGGTCG AGGTGCGGGT CAGCGACACC CAGGCGGTGA AGCGCGGCGA CATCCTCGTC
CGCCTCGACG ACAGCAACAT GCGGATCGCG CTCGCCCAGG CGGAGGCCGA TCTGGCGCGG
GCCCGGCGGA TGTTCCGCCA GGGGACCGCC ACCAGCGCCG CGCTGGCGGC ACAGGTCAAC
GCGCGCGAGG CCGACATCGC CACCGCCCAG TCGGATTACG ACAAGGCGCG CATCGACCTC
GACCGCCGCC TCGCGCTCCA GCCGTCGGGC GCGGTGTCGG GCGACGAACT GACCGCCGCG
CGCAACGCCT TCAACGCCGC CCGCGGCAAG CTCGCCCAGG CCCGCGCCAA CCAGGGCGCC
GCCGCCGGCG AACTGGCCGC GAACCAGGCG CTGGTCGCCG GATCGACGGT CGAGACCGAC
CCAATGGTGC TCGCCGCCAA GGCCAAGCTC GCCGCCGCCC AACTCGACTT CGAGCGCGCC
GTGATCCGCG CGCCGATCGA CGGCGTCGTC ACGCGCCGCC AGGTCCAGGT CGGCCAGCGG
GTGACGCAAG GGTCCCCGAT CATGATGATC GTCCCGGTGT CGCAGGTCTA TGTCGACGCC
AATTTCAAGG AACGGCAGCT CCGCCGGGTG AAGCCCGGCC AGTCGGCCAA GGTCACCGCC
GACCTCTATG GCGGCGGCGT CGTCTACCAC GGCAAGGTAG TCGGCTTCTC GGGCGGCACC
GGATCGGCCT TCGCGCTGAT CCCGGCACAG AACGCCACCG GCAACTGGAT CAAGGTGGTC
CAGCGCCTGC CGGTCCGCAT CGAGCTCGAT CCAAGCCAGC TGGCCGAGCA TCCGCTGCGC
GTCGGCCTGT CGATGGAAGT CGATATCGAC GTCTCCGGCG ACTGA
 
Protein sequence
MADVDPPKTS ADPVEDSESE ARREARLRAR KTWLIRFAIG LAVVALIFGA WYLLIGRNHV 
STDNAYVNAE VAQVTPLISA QAVEVRVSDT QAVKRGDILV RLDDSNMRIA LAQAEADLAR
ARRMFRQGTA TSAALAAQVN AREADIATAQ SDYDKARIDL DRRLALQPSG AVSGDELTAA
RNAFNAARGK LAQARANQGA AAGELAANQA LVAGSTVETD PMVLAAKAKL AAAQLDFERA
VIRAPIDGVV TRRQVQVGQR VTQGSPIMMI VPVSQVYVDA NFKERQLRRV KPGQSAKVTA
DLYGGGVVYH GKVVGFSGGT GSAFALIPAQ NATGNWIKVV QRLPVRIELD PSQLAEHPLR
VGLSMEVDID VSGD