| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1072 |
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| Symbol | |
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| ID | 5196797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1197822 |
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| End bp | 1198526 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640580617 |
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| Product | protocatechuate 3,4-dioxygenase, alpha subunit |
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| Protein accession | YP_001261576 |
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| Protein GI | 148553994 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.626236 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.122531 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATTG AAACCGACGA GCTTTCGACG CGCCATCCGG CGCCGCGGCT CGACAACCTC
GATCCGGCGT TGTTCGGGCA GACGCCCTCG CAGACCGTCG GTCCCTTCTT CCACTACGGC
CTCCCCTGGA AGGGCGGAGC CGACCTGACC GGTGGATCGG CGCTGGGCGC ACGGCCCGAA
CTGTTTCCCG AGGAACATTA TGTGCTGGGG GAGGCGACCT TCCGGGGGGC GCCGGCTGGC
GAAGCGATCG AGCTGTGCGG CCGGGTGCTG GACGCCGCCG GGCAGCCCGT GGGCGATGCC
ATGGTCGAAA TCTGGCAGGC CAATGCCGCC GGGCGGTACG CCTCGATCGC GGATCGCCGG
GACGAGGTGC CGCTCGATCC GCATTTCCAT GGCTTCGCGC GGTCCGCGAC CGACGATGAG
GGCCATTATC GCTTCCGGAC GATCCGGCCC GGCCGCGTGC CCGGGCCTGG CAACAGCCTG
CAGGCGCCAC ATATCGCCGT GTCCCTGTTC GGACGCGGGA TATTGAAGCG TCTCGTCACG
CGGATCTATT TCGCGGACGG AGAAGGCAAC GACACGGATC CGATCCTGGC GCGGGTGCCC
GCGGAGCGGC GCCGGACGCT CGTCGCCGAT CGCCAGGACG GCGACGAATG GAGGATGGAT
CTGCGGCTCG GCGGCGAACG GGAAACGGTC TTCTTCGCCC TATGA
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| Protein sequence | MTIETDELST RHPAPRLDNL DPALFGQTPS QTVGPFFHYG LPWKGGADLT GGSALGARPE
LFPEEHYVLG EATFRGAPAG EAIELCGRVL DAAGQPVGDA MVEIWQANAA GRYASIADRR
DEVPLDPHFH GFARSATDDE GHYRFRTIRP GRVPGPGNSL QAPHIAVSLF GRGILKRLVT
RIYFADGEGN DTDPILARVP AERRRTLVAD RQDGDEWRMD LRLGGERETV FFAL
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