Gene Swit_1022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1022 
Symbol 
ID5198770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1138728 
End bp1140881 
Gene Length2154 bp 
Protein Length717 aa 
Translation table11 
GC content65% 
IMG OID640580568 
ProductTonB-dependent receptor 
Protein accessionYP_001261527 
Protein GI148553945 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.549497 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0859542 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCACCA AAACCATGCT TTCGCTGTCG GTCGCCGCGG GCGCGCTGTT CGCCGCCGCG 
CCGGCCTTCG CCCAGGCCGA TGCGCCGCAA GCCGCCGCCG AGACCGCCGA CCAGGGTGGC
TTCGGCGACA TCATCGTCAC CGCGCAGCGC CGCGAGCAGC GGCTGCAGGA CGTGCCCGTC
TCGGTCACCG CGCTGACCGG CGAGCAGCTC ACCGGGCAGG GCGTCACCTC GACCCACGAC
ATCGCCCAGT CGATCACCGG CATGACGATC ACCGAGAGCG GCGGCTATGT GCAGCCCTTC
ATCCGTGGCG TCGGATCGAC CGTCACCAAC CTCGGCGAGC CGGGATCGGC GGCCTTCTAC
ATCGACGGCG TCTACATGCC GACCGTCAAC GGCCAGCTCT ACCAGCTCGC CAACGTCGAA
TCGATCCAGG TGCTGAAGGG GCCGCAGGGC ACGCTGTTCG GCCGCAACGC CAACACCGGC
GCGATCATCA TCACCACCAA GCAGCCGCAG TTCACGCCCG CGGGCTCGTT CAGCGCCAGC
TACGGCAATT ACAACTCGTT CGTCGGCAGC GGCTTCGTCA CCGGCCCGGT CTCCGACACG
ATCGCGGTGT CGCTGGCCGG CAATTACGAC CGCCACGACG GCTGGTTCAA GAACAGGAAC
CCGGCCAACG GCCTGGGCAA GCGCGTCGGC GATTCCAAAC GCTGGACGAT TCGCGGCAAT
GTCCTGATCA AGGCGAGCGA CAATCTCGAC ATCACCCTGT CGGGCGACGC GATGGACATC
AACGACGCCA GCCCGATCAT CATCCAGCCG ATCGACCGCT ATCAGGGCTA TGTCCCCGGC
GCGCTGCTGC CGACCGGGCC CTATGACTAT ATCGGCAACG AGAAGGTCGG CTACAAGGTC
GAGCAGCAGG GCGCGTCGGG CAAGCTCGAC TGGGATCTCG GCGGCGTGAA GCTGGTCTCG
ACGACCGCGT GGCGCCATTA TGAGAACCAT TCGATCGACT ATGACTCGGA CACCACGCCG
TTCCGCTACT CGCAGATCAA CAACAACGAC GTCGGCAACA ACTTCACCCA GGAAATCCTG
CTCAACTCGG ACAACAAGAG CAATTTCTCC TGGGTGCTCG GCGGCTTCTA CCTGCGCCAG
AACGGCAAGC TCGACCCGCT CTACGTGCTG TCGGGGACGA CGCTGACGAC GATCGCGGTC
AAGCAGATCA CCGACGCCTA TGCGGTCTTC GCCGACGGGA CGCTGACGCT CGGCCGGTTC
GACCTGACCG GCGGCATCCG CTACAGCTAT GAGAAGAAGG TGATCACCGG ATCGCTCAAC
GGCATCCAGC GGCTCGACCA TGTCAAGGCG AGCTGGGATT CGTTCACGCC GCGCGCGGTG
CTGGCCTATC ATCCGACCGA CGACATGATG TTCTACGGAA GCTTCTCCAA GGGCTTCAAG
AGCGGCGCGT TCAACGCCAA CGCGCTGTCG CCGGTGCCGA TCGATCCCGA GAAGGTCGAC
GCCTATGAGA TCGGCGGCAA GCTGACCCTG GGCCGCGGCT TCACCGTCAA CGTCGCGGGC
TTCCACTACA AGACCAAGGA CCTGCAGGTG CAGGCGCTCA ACCCGATCAC CAACCTGATC
GAGCTGCGCA ACGCCGCGTC GGTCAAGTCG GACGGCGTCG ACCTCGACGT CGTGTTCGCG
CCGACCCGCA AATGGTCGAT CAAGTTCGGC GCCTCCTATC TGAAGGCGAA ATTCTCGAAG
TTCACCAATG CGCAGGTGTT CCTGCCGGTG CCGGGCGGCG ATGGACGCAA CGCGTCGGCG
ATCGTCGACG TGACGGGCAA GCGCAACGTG CGGTCGCCCG ACTGGACGCT CAACTGGGCG
GTCGACTATA CGATCGACCT GCCGGGCGGC GGGACGCTCG TCCCCTCGGG CAACGTCTAT
TATTCGTCCA AATTCTACTG GACGGTCGAC AACCGCATCT CCGAGCCGCA GCATGTCGTG
ATCAACGCCA GCCTGACCTG GAACCTGCCG GGCGACCGCT TCTCGGTCAC GGCGTTCGGC
CGGAACATCA CCGACGAGCT GCGCTTCCGC AACGTCTCCG CCTCGGCCCA GGCCGACCGG
CGCGCGGCGG ACGAGCCGGC GCTCTACGGC GTCCGCGCCT CGTACAAGTT CTGA
 
Protein sequence
MITKTMLSLS VAAGALFAAA PAFAQADAPQ AAAETADQGG FGDIIVTAQR REQRLQDVPV 
SVTALTGEQL TGQGVTSTHD IAQSITGMTI TESGGYVQPF IRGVGSTVTN LGEPGSAAFY
IDGVYMPTVN GQLYQLANVE SIQVLKGPQG TLFGRNANTG AIIITTKQPQ FTPAGSFSAS
YGNYNSFVGS GFVTGPVSDT IAVSLAGNYD RHDGWFKNRN PANGLGKRVG DSKRWTIRGN
VLIKASDNLD ITLSGDAMDI NDASPIIIQP IDRYQGYVPG ALLPTGPYDY IGNEKVGYKV
EQQGASGKLD WDLGGVKLVS TTAWRHYENH SIDYDSDTTP FRYSQINNND VGNNFTQEIL
LNSDNKSNFS WVLGGFYLRQ NGKLDPLYVL SGTTLTTIAV KQITDAYAVF ADGTLTLGRF
DLTGGIRYSY EKKVITGSLN GIQRLDHVKA SWDSFTPRAV LAYHPTDDMM FYGSFSKGFK
SGAFNANALS PVPIDPEKVD AYEIGGKLTL GRGFTVNVAG FHYKTKDLQV QALNPITNLI
ELRNAASVKS DGVDLDVVFA PTRKWSIKFG ASYLKAKFSK FTNAQVFLPV PGGDGRNASA
IVDVTGKRNV RSPDWTLNWA VDYTIDLPGG GTLVPSGNVY YSSKFYWTVD NRISEPQHVV
INASLTWNLP GDRFSVTAFG RNITDELRFR NVSASAQADR RAADEPALYG VRASYKF