Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1001 |
Symbol | |
ID | 5200207 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1114176 |
End bp | 1116272 |
Gene Length | 2097 bp |
Protein Length | 698 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640580547 |
Product | Pyrrolo-quinoline quinone |
Protein accession | YP_001261506 |
Protein GI | 148553924 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4993] Glucose dehydrogenase |
TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.132908 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCGA TCGGGGGAAT GGGCATGAAG CGTCTCGTCA TCGGCCTCGC CGGCGCCGCC GCGCTCGCCA TCGCCGCATC GCACGTCACC GCGCAGGAAG GCGGCAGCGC CTCGACCGTC AGCGCCGACG AATGGCCCTA TTATGGCCGC GACGAGAAGG AACAGCGGTT CAGCCCGCTC GACCAGATCA ACCGCGCCAC CGTGGCGAAG CTCGGCCTCG CCTGGAGCGC GGAGCTCGAC AGCGACCGGG GACAGGAGGC GACCCCGATC ATGGTCGACG GGGTGATCTA TGTCAGTACC GCCTGGTCGC TGGTCTACGC CTTCGACGCG GCGACCGGAA AGCAGCTCTG GTCCTACGAT CCGCAGGTGC CGCGCGAGTC GCTCGCCAGC GCCTGTTGCG ACGCGGTCAA TCGCGGCGTC GCCGTGCACG GCGGCAAGGT GTTCGTCGGC ACGTTGGACG GCCGCCTCGT CGCGGTCGAC GCGAAGACCG GCAAGCTTGC CTGGCAGGTC GACACGCTCG CCGGTCAGCC CAAAACGATG CGCTACACCA TCACCGGCGC GGTCCGCGCG GTGAAGGACA AGGTGGTGAT CGGCAACAGC GGCGCCGAGT TCGGCGTGCG CGGCTTCGTC ACCGCCTATG ACGCCGCCAC CGGCAAGCTC GCCTGGCGCT TCTACCTGAC CCCCAATCCG CAGGGCAAGC CGGACGGAGC GGCGTCGGAC GAGGTTCTGC TCGCCAGGGC GCAGTCGACC TGGGGCGACG GCGAATGGCG CAACAGCGGC GGCGGCGGCA CTGCCTGGGA CGCGCTGACC TACGATCCAG ACGCCGACCT GCTCTACATC GGCGCCGGCA ATGGCGGACC GTTCGACTAT CAGGTCCGCT CGGGCGGCAA GGGCGACAAC CTGTTCCTGT CGTCGATCGT CGCGGTCGAT CCCGACACCG GCAGATATGC CTGGCACTAC CAGACCACCC CGTCCGACAG CTGGGATTAT ACCGCGACCC AGCAGATCAT GGGCGCGCGC CTCGTCATCG GCGGCAAGCC ACGCGACGTG GTGATGCAGG CGCCCAAGAA CGGCTATTTC TATGTGCTCG ACCGCAAGAC GGGCGAGCTG CTCTCGGCCA GGCCGTTCGC GCCCGTCACC TGGTCGACCG GCATCGACAT GACGACCGGC CGGCCAATCC TGGCGAAGAA CGTCCATTAT CAGGACGGCC CCTCGATCCA GCAGCCGGGA CCGTTCGGCG CGCATAGCTG GCAGGCGATG TCGTACAGCC CGCGCACCGG GCTGGTCTAT ATCCCGGTCC AGCTCACCCC CGGCGAATAT GAGAAGCTCC CCGCCTTCCA GCATCGCCCG ATCGGCCAGA ATGCCGGCAT CGCGATGAAG GAATTCCCGG AGGACCAGCT CGACGCGATC CGCAAGGCGA TGACCGGCCA GCTCCTCGCC TGGGACCCGG TCGCGCAAGC GGCGCGCTGG TCGGTGCCGA AGCGCTATTT CGTCAATGGC GGCACGCTGG CGACGGCCGG CGACCTGGTG TTCCAGGGCG ACATGGAGGG CATGCTCGCC GCCTATGACG CGGCCAGCGG CGCGAAGCTC TGGTCGTTCG ACGCCGGCAC CGCGATCATC GCGCCGCCGA TCAGCTACCG GATCAAGGGC CAGCAATATG TCGCCGTCCT CTCGGGGTTC GGCGGCGCCG GCGCGCTGGT CGGCCGGGTC GTGCCCGACA ATCCGCGCCG CAACGGCCGG CTGCTGGTGT TCAAGCTCGG CGGCACGGCA AAGCTGACGC GCGAGCCCCC CGCCCCGCGC GCGCCGATCG ACGTGACCGG ACTGACCTCG ACCGGCGATC CCGACGCGGG CATGGCCGAA TATGACCGCA CCTGCACGGT CTGCCACGGC GGCAACGCCT CGGTCGCCTA CACCGCCGAC CTGCGCCGCT CGGGCGCGCT CGCCGATCCG GCGCTGTGGA AGGCGATCGT GATCGACGGC GCGCTCAAGG ACATGGGCAT GGTGTCCTTC GCCCAGATCC TCACCCCGCA ACGCGCCGAG GACATCCGCG CCTATGTGCT GCGCCAGGCG CGGAAGGGCC AGGCGGCGGG GAAGTAG
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Protein sequence | MRAIGGMGMK RLVIGLAGAA ALAIAASHVT AQEGGSASTV SADEWPYYGR DEKEQRFSPL DQINRATVAK LGLAWSAELD SDRGQEATPI MVDGVIYVST AWSLVYAFDA ATGKQLWSYD PQVPRESLAS ACCDAVNRGV AVHGGKVFVG TLDGRLVAVD AKTGKLAWQV DTLAGQPKTM RYTITGAVRA VKDKVVIGNS GAEFGVRGFV TAYDAATGKL AWRFYLTPNP QGKPDGAASD EVLLARAQST WGDGEWRNSG GGGTAWDALT YDPDADLLYI GAGNGGPFDY QVRSGGKGDN LFLSSIVAVD PDTGRYAWHY QTTPSDSWDY TATQQIMGAR LVIGGKPRDV VMQAPKNGYF YVLDRKTGEL LSARPFAPVT WSTGIDMTTG RPILAKNVHY QDGPSIQQPG PFGAHSWQAM SYSPRTGLVY IPVQLTPGEY EKLPAFQHRP IGQNAGIAMK EFPEDQLDAI RKAMTGQLLA WDPVAQAARW SVPKRYFVNG GTLATAGDLV FQGDMEGMLA AYDAASGAKL WSFDAGTAII APPISYRIKG QQYVAVLSGF GGAGALVGRV VPDNPRRNGR LLVFKLGGTA KLTREPPAPR APIDVTGLTS TGDPDAGMAE YDRTCTVCHG GNASVAYTAD LRRSGALADP ALWKAIVIDG ALKDMGMVSF AQILTPQRAE DIRAYVLRQA RKGQAAGK
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