| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0628 |
|---|
| Symbol | |
|---|
| ID | 5197964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 681560 |
|---|
| End bp | 683125 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640580172 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001261134 |
|---|
| Protein GI | 148553552 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.976562 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCTT TCGGCAAGCG TGGAGCGATG ACGCACGGGG CCAAGCCCGC CTTCGGCGTG
GCGCGCCCGA TGCACGTCGA CAGCGCGCCC GGACCGCTGA CCGGCGGGCT GCAATTCCCG
TCGATCGACA GCGCCGCCTT CCCCGGCGCG GGCACCGATC CCTTCGCCGG CCTGCCGAGC
TTCGACGATC CGATCGCGGT GAGCGAGGAG GACGTCGCCC TCCCCAAGCA TGCCGACGCG
ATGGCGCGGC TCGCGATCCG CGAGGCCTCG TCGGGCGATG CCGGCCGCGC GCGGGTCGAG
GGGTTCGAGG CGTCGATCCA CAAGATCAAG GAACAGGTGC TTCCCCGCCT GCTCGAACGG
GTCGACCCCG AAGCCGCCGC CTCGCTGAGC AAGGACGAGT TGGCCGAGGA GTTCCGCCCG
ATCATCGGCG AGGTGCTCGC CGAGCTGCGC ATCACCCTCA ACCGCCGCGA GCAGTTCGCG
CTCGAAAAGG TGCTGATCGA CGAGCTGCTC GGCCTGGGGC CGCTCGAGGA GCTGCTGAGC
GACCCGTTGA TCACCGACAT CATGGTCAAC GGCCCCGAGC AGACCTATGT CGAGCGCAAG
GGCAAGCTCG AGCTCGCCAA GGTCACCTTC CGCGACGAGG AGCATCTGTT CCAGATCGCC
CAGCGCATCG TCTCCAAGGT CGGCCGCCGG GTCGACCAGA CCACGCCGCT GGCCGACGCG
CGCCTGACCG ACGGCAGCCG CGTCAACGTC ATCGTCCCGC CGCTGTCGCT GCGCGGCACG
GCGATCTCGA TCCGCAAATT CTCGTCCAAG CCGATCACGC TCGACATGAT GGCGCGCAGC
GGATCGATGA GCGAGCAGAT GGCGACGATG CTCAAGATCG CCGGGGCGAG CCGCTTCAAC
ATCGTCATCT CGGGCGGCAC CGGATCGGGC AAGACGACGA TGCTCAACGC GCTGTCGAAG
ATGATCGACC CGGGCGAGCG CGTCGTCACC ATCGAGGACG CGGCCGAGCT CCGGCTGCAG
CAGCCGCACT GGCTGCCGCT CGAGACGCGG CCCGCCAATC TGGAAGGCCA GGGCGCGATC
ACGATCCGCG ACCTCGTCGT CAACGCGCTG CGCATGCGGC CCGACCGCAT CATCCTGGGC
GAGATTCGCG GGCCGGAATG TTTCGACATG CTGGCCGCGA TGAACACCGG TCATGACGGA
TCGATGTGCA CCCTCCACTC CAACAGCCCG CGCGAGGCGC TGGCGCGCAT GGAGAACATG
GTGATGATGT CGGACATCAA GGTGCCCAAG GAGGCGATCT CGAAGCAGAT CGCCGACTCG
GTCGACCTGA TCGTCCAAGT CAAGCGCCTG CGCGACGGAT CGCGCCGCGT CACCAGCATC
ACCGAGGTGC TGGGCATGGA AGGTCCGGTG ATCATCACCC AGGAACTGTT CAAGTTCGAA
TATCATGCCG AGGATTCGGA AGGCCGGATC ATCGGCGAAT TCGCGACCTC GGGCCTGCGA
CCCTACACGA TCGAGAAAGC GCGCCAGTTC GGCTTCGATC AGCCGCTGCT CGAAGCCTGC
CTCTGA
|
|---|
| Protein sequence | MSAFGKRGAM THGAKPAFGV ARPMHVDSAP GPLTGGLQFP SIDSAAFPGA GTDPFAGLPS
FDDPIAVSEE DVALPKHADA MARLAIREAS SGDAGRARVE GFEASIHKIK EQVLPRLLER
VDPEAAASLS KDELAEEFRP IIGEVLAELR ITLNRREQFA LEKVLIDELL GLGPLEELLS
DPLITDIMVN GPEQTYVERK GKLELAKVTF RDEEHLFQIA QRIVSKVGRR VDQTTPLADA
RLTDGSRVNV IVPPLSLRGT AISIRKFSSK PITLDMMARS GSMSEQMATM LKIAGASRFN
IVISGGTGSG KTTMLNALSK MIDPGERVVT IEDAAELRLQ QPHWLPLETR PANLEGQGAI
TIRDLVVNAL RMRPDRIILG EIRGPECFDM LAAMNTGHDG SMCTLHSNSP REALARMENM
VMMSDIKVPK EAISKQIADS VDLIVQVKRL RDGSRRVTSI TEVLGMEGPV IITQELFKFE
YHAEDSEGRI IGEFATSGLR PYTIEKARQF GFDQPLLEAC L
|
|---|
| |