| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0592 |
|---|
| Symbol | clpX |
|---|
| ID | 5200797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 643597 |
|---|
| End bp | 644871 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640580135 |
|---|
| Product | ATP-dependent protease ATP-binding subunit ClpX |
|---|
| Protein accession | YP_001261098 |
|---|
| Protein GI | 148553516 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.477352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAGT TGACCGGCGG CGACTCGAAG AGCACGCTTT ACTGCTCCTT CTGCGGCAAG
TCGCAGCACG AGGTCCGCAA GCTGATCGCT GGCCCGACCG TGTTCATCTG CGACGAGTGC
GTCGAGCTCT GCAACGACAT CATCCGTGAG GAGACGAAGG GCGCGCTCGT CAGCAAGAAG
GACGGCGGGG TCCCGACCCC GCACGAGATT TGCGAGCATC TCGACCAATA TGTGATCGGC
CAGGCCAAGG CCAAGCGCGT CCTCTCGGTC GCGGTGCACA ACCATTACAA GCGGCTCAAC
CACGGCGCCA AGGGCGCCGA TGTCGAGCTG GCCAAGTCGA ACATCCTGCT CGTCGGCCCG
ACCGGATCGG GCAAGACGCT GCTCGCCCAG ACGATGGCGC GGCTGCTCGA CGTGCCGTTC
ACCATGGCCG ACGCCACCAC GCTGACCGAG GCGGGCTATG TCGGCGAGGA TGTCGAGAAC
ATCATCCTCA AGCTGCTCCA GGCCTCCGAC TATAATGTCG AGCGGGCGCA GCGCGGCATC
GTCTATATCG ACGAGATCGA CAAGATCAGC CGCAAGGCCG ACAATCCCTC GATCACGCGC
GACGTGTCGG GCGAGGGTGT CCAGCAGGCG CTGCTCAAGC TGATGGAAGG CACCACCGCG
AGCGTTCCGC CGCAGGGCGG CCGCAAGCAT CCGCAGCAGG AGTTCCTCCA GGTCGACACG
ACCAACATCC TGTTCATCTG CGGCGGCGCC TTCGCGGGGC TGGAGAAGAT CATCGGCGAT
CGCCTGCAGG GCAAGTCGAT CGGCTTCGGC GCCTATGTCG CCGCGCCCGA GGAGCGCCGC
ACCGGCGAGA CCCTCCAGCA GTGCGAGCCC GAGGACCTGC TCAAGTTCGG CCTGATCCCC
GAATTCGTCG GCCGCCTGCC GGTGATCGCG ACGCTGATGG ACCTCGACGA GGCCGCGCTG
GTCGAGATCC TGACGGCGCC GAAGAACGCG CTGGTCAAGC AGTATCAGAA GCTGTTCGAC
ATGGAGGGTG TCAAGCTCGG CTTCACCGAC GACGCGCTGG TCGCGATCGC CCGCAAGGCG
ATCACCCGCA AGACCGGCGC GCGCGGCCTG CGCTCGATCC TCGAAGGGCT GCTGCTCGAC
ACGATGTTCG ACCTGCCGTC GATGGACGGG GTCGACGAGA TCATGGTCGA CAAGGACGTG
GTCGAGGGCC GCAAGGACCC GGTCCGCGTC TTCACCAAGA AGAACAAGGA AAAGGCCGGC
GGCGACGCCG CCTGA
|
|---|
| Protein sequence | MTKLTGGDSK STLYCSFCGK SQHEVRKLIA GPTVFICDEC VELCNDIIRE ETKGALVSKK
DGGVPTPHEI CEHLDQYVIG QAKAKRVLSV AVHNHYKRLN HGAKGADVEL AKSNILLVGP
TGSGKTLLAQ TMARLLDVPF TMADATTLTE AGYVGEDVEN IILKLLQASD YNVERAQRGI
VYIDEIDKIS RKADNPSITR DVSGEGVQQA LLKLMEGTTA SVPPQGGRKH PQQEFLQVDT
TNILFICGGA FAGLEKIIGD RLQGKSIGFG AYVAAPEERR TGETLQQCEP EDLLKFGLIP
EFVGRLPVIA TLMDLDEAAL VEILTAPKNA LVKQYQKLFD MEGVKLGFTD DALVAIARKA
ITRKTGARGL RSILEGLLLD TMFDLPSMDG VDEIMVDKDV VEGRKDPVRV FTKKNKEKAG
GDAA
|
|---|
| |