| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0541 |
|---|
| Symbol | |
|---|
| ID | 5200648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 593845 |
|---|
| End bp | 595392 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640580082 |
|---|
| Product | alkaline phosphatase |
|---|
| Protein accession | YP_001261047 |
|---|
| Protein GI | 148553465 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCAC GCCGCCAGAT TCTCGCCGGG GCCGGCGTCG GCCTGGTCGC CGCCCCCGCG
ATCCTCCGCG CCCAGCAACT CCTCACCGCC TTCCCGTTCC GGCTCGGCAT CGCCTCGGGC
GATCCGAGCC ATGACGGCTT CGTGATCTGG ACGCGGCTCT GCCCCGATCC GGTCGACGAG
CATGGCGGCA TGCCGATGGG CCCGGTCGAC GTCGACTGGT TCGTCTATGA GGACGTGGGG
ATGAAGCGGG TCGCGCAGAA GGGCAGCGCG ACCGCCTGGC CCGAACTCGG CCATTCGATC
CATGTCGAGC TTGCCGGCCT GCAGCCCGAC CGCCCCTATT GGTATCGCTT CGTCCTCGGC
CGCGACAAGA CCCAGCTCGG CCGGACCCGC ACCCTGCCCG CGCCCGGCGC GGCGTTCGAC
CGGCTGCGCT TCGCCGCGGC CGGATGCCAG CATTATGAGG ACGGGCTGTT CACCGCCTAT
GCCCATCTGG CGCGCGAGGA CGTCGCCTTC ATCTGGCACT ATGGCGATTA TATCTACGAG
GATCGCGCCC GGCAGGTGAA CTATGAGCGC GACGGCCGCG CGCGCGTCCA TGTCCGCGAT
CATGTCGGCA CCGAATGCTA TACGATCGGC GACTATCGGC GCCGCTACGC CCAGTACAAG
ATGGACCCCG ACCTGCAGGC CGCGCACCGC GTCGCGCCCT GGTTCACCAC CTTCGACGAC
CATGAGGTGG TCGACAACTG GACCTCGACC GTCAGTCCCT ATCAGCCCGA TCCCGCGCTG
TTCGCGATCC GCCGCGCGGC GGCGATGCAG GCCTATTATG AGCATATGCC GCTGCGCCGG
GCGTCGATGC CCAGCAACGG TGCGATGCAG CTCTACCGCC GCAGCCGGAT CGGCGATCTG
CTGACGACGC ATTTCCTCGA CACGCGCCAA TATCGCAGCC CGCTGCCGTG CAAGGGCGGG
TTCGAGCCTA CCTGCCCCGC CGTCGCCGAT CCGAAGCAGA CAGTGCTGGG CGGCGCGCAG
CAGCAATGGC TGGAGCGCGG CCTGAGCGAC GGCGGCAGCC GCTGGAACCT CGTCGCCCAG
CAGGTGATGA TGATGCCGCT CGACCGCCAG AGCGAGCCCG GCGGCGGCGA GATCCGCAAC
CTCGACAGCT GGGCGGGCTA TGACGCCGCG CGCGAACGGA TGGCGGCGCG CTTCGCCGGA
CGCGGCGACG TGATCGTGAT GACCGGCGAC GAGCACCAGA ATTTCGCGGG CGAACTGCGC
CGCCAGGGCG GCAAGGGCGA GGTCGCCGCG CCGGAGTTCG TCGTCACCTC GATCAGCTCG
GGCGGCGACG GATGGGTCAG GCCCGAGGTG CAGGCGCAGC TGCGCGCCCA CAACCCGGCA
CTTCAATATG TCAGCGACCA GCGGGGCTAT GCGGTCTGCG AGGTGACGCG CGACCTGTGG
CAGACCCGCT TCCGCGGCGT CGACCAGGTG ACGACCCCCG GCGGCGCGAT CGCGACGCTC
GCCACCGCCA GCGTCGAACG CGGCAAGCCG GCGATCAACC TCTCCTGA
|
|---|
| Protein sequence | MFSRRQILAG AGVGLVAAPA ILRAQQLLTA FPFRLGIASG DPSHDGFVIW TRLCPDPVDE
HGGMPMGPVD VDWFVYEDVG MKRVAQKGSA TAWPELGHSI HVELAGLQPD RPYWYRFVLG
RDKTQLGRTR TLPAPGAAFD RLRFAAAGCQ HYEDGLFTAY AHLAREDVAF IWHYGDYIYE
DRARQVNYER DGRARVHVRD HVGTECYTIG DYRRRYAQYK MDPDLQAAHR VAPWFTTFDD
HEVVDNWTST VSPYQPDPAL FAIRRAAAMQ AYYEHMPLRR ASMPSNGAMQ LYRRSRIGDL
LTTHFLDTRQ YRSPLPCKGG FEPTCPAVAD PKQTVLGGAQ QQWLERGLSD GGSRWNLVAQ
QVMMMPLDRQ SEPGGGEIRN LDSWAGYDAA RERMAARFAG RGDVIVMTGD EHQNFAGELR
RQGGKGEVAA PEFVVTSISS GGDGWVRPEV QAQLRAHNPA LQYVSDQRGY AVCEVTRDLW
QTRFRGVDQV TTPGGAIATL ATASVERGKP AINLS
|
|---|
| |