| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0478 |
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| Symbol | |
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| ID | 5200159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 511850 |
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| End bp | 514012 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640580017 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001260984 |
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| Protein GI | 148553402 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.742191 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA TAATTTCTGG GTCATCCATA AAAGTGCTTG GCGTTATCCT CTGCATGGCG
CCCGCCCATG CGGTATTCGC GGCCGAAGCC GGCGCCGATA GCGAGGTTTC TTCTGTCGAT
AGCGGCGAGA TCGTCGTCAC CGCCCGGCGC CGCGCCGAAA GCCTGCAGGA CGTTCCTGTC
TCTGTGACAG CCTTCGACCA GGCCCAACTC GAAACCGCCG GCATCAAGAG CCTGCGCGAC
ATGTCGCGGC TGATGCCCGG CGTCCAGTTC ACCGAGCGCG GCAGCCTGTC GACCCAGCTC
ACCATCCGCG GCGTCGGCGG GGATTCGCGC AACATCGGCA TCGAGGCCGG CGTCGGCATG
TATCTCGACG GCGTCTATAT CCCCCGCACC TCGGGCTACA ATGCCGACCT GGCCGAGATC
GCCCAGGTCG AGGTGCTGCG CGGACCGCAG GGGACGCTGT TCGGCAAGAA TACGATCGGC
GGCGTCATCA ACATCACCAC CAAGGAGCCC GGCGACACCG TCGAGGGCAG CGTCTACGCC
AGCTATGGCA ACTACAACGC CTTCCGGACG CAGGCGAGCA TCTCCGGCCC GCTGTCGGAC
ACGCTGTCGG CCAAGCTGAC CGTCGCGACC TATGACCGCG ACGGCTATAT CCACAACATC
TTCAACGATC AGGACGTCAA TGACGAGAAC CGCCGCGGCG CCCGCGCGCA GATCGTCTTC
AAGCCGTCCG ACGCGCTGAA GGTCAAGCTG AACGCCGACT TCACCCGCGA CCGGCGCACC
GTGCTCCAGA CCCAGATGGA TTCGCCGGTC GGTGCGGCGG CGCCCTATTA TACCGGCAAC
CGGTTCGAGG CGAACAGCGA CCAGCCCAAT GGCGACAAGC GCAACATGTG GGGCACCGAC
CTGACGGCGG AATACAGCCT GCCGAACGAC ATGGTGCTGG CATCGATCTC GGCCTATCGG
AAGATCGACG TCACGGTGTC GAGCGACATC GACCAGCTTC CGATCAACCT GTTCAACTCC
AATCCCTTGA CCGACTTCGT GCAGATGGCG AGTCAGGAAT TCCGGATCAC CTCGCCCAGC
GACGGCCCGT TCCGCTACGT CGGCGGCCTC TATTATTACC ACCAGAAGGG CACCGCGCTG
CGGAAGATCT ATATCGGCGG GTCGCTGGCC AACGGCGCGC TCAACCGTGC CAAGGCGATC
ACCAACAGCT ACGCCGCCTA TATCAACGCC GATTACGACC TGCTGCCGCA GCTCACCCTC
AACGGCGGCC TGCGCTACAC CTATGAGAAG AAGACCGGCG ACTATCTGCA GGTTCGCGGC
CCGGTGCTGA GCTATGATTT CGACGATCTG CGCCGCACCG ACAAGAACGT CTCCTGGACG
GGCAGCCTGA CCTACAAGCC GACCCGCGAA CTGACGATCT ACGGGACCGT CTCGAAGGGC
TTCAAGTCGG GCGGCTTCAA CCTCGACACG ATCGGCGCGG CCAACCTGAT CTCGCGCGAC
CTGATCTTTG GCCCGGAATC GGTGATCAAC TATGAGGCCG GGATCAAGGG CCAGCTGTTC
GGCCGGCTGC TGCGCTACAG CCTGGCGGCG TTCCGCATGG ACTATTCGGA CAAGCAGGTC
GCCCAGATCG TGCCGACCGG GGCGAGCACC GTCTCGTCGG TCCAGGTCAC CAACGCAGGC
AAGGCGCGGA TCAAGGGCTT CGAGGTCGAG GCGACGCTGC GGCCGTTCGA AGGGCTGAGC
CTGTCGGGCA ACGCCTCCTA TCTCGACGCC AAATATACCC GCTTCGACTA TTCGACGATC
GGCTCGACGG TGGCGGTCTC CTATGCCGGC AACCGGATCG AGTTCACCCC CGACTGGATG
ATCGGCGGGC AGGCCGAATA TCGTTTCCCG GCCGGACCGG GCGAGGTCTT CCTGGTCGGC
AGCGCCACCT ATACCGGCGA CATGTACCTC CAGCCCGAGA AGCTGCCGAA ATATCGTGAG
TCCGGCTATA CGCTGATCGA CGCGCGGATC GGCTATGAGG TCGGCGACCT GATGATCGCG
CTGTGGGGCA AGAACCTCAC CAAGCAGGAC TATCGCACCT ATGCCCGCGT GTTCGGCGGC
CTCGACCAGG CGGTCTGGGG CGAGCCGCGC ACCTATGGCG TCGAGATGCG CTACCGCTTC
TGA
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| Protein sequence | MKKIISGSSI KVLGVILCMA PAHAVFAAEA GADSEVSSVD SGEIVVTARR RAESLQDVPV
SVTAFDQAQL ETAGIKSLRD MSRLMPGVQF TERGSLSTQL TIRGVGGDSR NIGIEAGVGM
YLDGVYIPRT SGYNADLAEI AQVEVLRGPQ GTLFGKNTIG GVINITTKEP GDTVEGSVYA
SYGNYNAFRT QASISGPLSD TLSAKLTVAT YDRDGYIHNI FNDQDVNDEN RRGARAQIVF
KPSDALKVKL NADFTRDRRT VLQTQMDSPV GAAAPYYTGN RFEANSDQPN GDKRNMWGTD
LTAEYSLPND MVLASISAYR KIDVTVSSDI DQLPINLFNS NPLTDFVQMA SQEFRITSPS
DGPFRYVGGL YYYHQKGTAL RKIYIGGSLA NGALNRAKAI TNSYAAYINA DYDLLPQLTL
NGGLRYTYEK KTGDYLQVRG PVLSYDFDDL RRTDKNVSWT GSLTYKPTRE LTIYGTVSKG
FKSGGFNLDT IGAANLISRD LIFGPESVIN YEAGIKGQLF GRLLRYSLAA FRMDYSDKQV
AQIVPTGAST VSSVQVTNAG KARIKGFEVE ATLRPFEGLS LSGNASYLDA KYTRFDYSTI
GSTVAVSYAG NRIEFTPDWM IGGQAEYRFP AGPGEVFLVG SATYTGDMYL QPEKLPKYRE
SGYTLIDARI GYEVGDLMIA LWGKNLTKQD YRTYARVFGG LDQAVWGEPR TYGVEMRYRF
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