| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0451 |
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| Symbol | |
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| ID | 5196830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 480167 |
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| End bp | 481546 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640579990 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001260957 |
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| Protein GI | 148553375 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.841968 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCGCG GCAGCCTGCT CCTGCCCTTG CTTCTCGGCG GATGCGCGGC CGGCCATATT
AAGCCTGTCG CGGTGCCTCC AGTCGACGCC CCCGCCGCCT GGCGGACCGC CGCCCCGCTG
TCGGCGGTCG AGCGCGACTG GTGGACCGGC TTCGGCGATC CGGCGCTGAC CGCGCTGGTC
GATCGCGCGC TCGCCAACAA CAGCGACATC GGCATCGCCG CCGGGCGGGT GCGCGAGGCG
CGGGCCAATC TGGCGGCGGC GCGCGCGACG CTGCTCCCGA CGCTCGACGC CAACCTGACC
GGCGGTCGGA CGCGCAGCAT CAGCCCCTTC GGCACCGCCG AGGTCCAGAA CGCCGCGCAG
CCGCAGGTCC AGGCCGCTTA TGAGATCGAC CTGTTCGGCC GCCTCGCCGA CCAGCGATCG
GCCGCGCGCA GCGCCTATCT CGCGAGCGAG GCCGCCCGCG ACGCGGTTCG CCTCGCCATC
GCCTCGGCAA CCGCGAGCGG CTATGTCACG CTGCTCGGGC TCGACACCCG GCTCGACATC
GCCCGCCACA CGCTGGCGGC GCGCGGGACG TCGCTGAAGA TCGCCCGCTC GCGCGTCTCG
AACGGCTATT CGCCCAAGCT CGAACTGCAA CAGGCGCAGG CCGAATATGA CGCGACCGCC
GCGATCGTCC CGCAGATCGA GCTCGCCGTC GCGCGGACCG AGCACGGCCT GAACCTGCTG
ACCGGCGACA CGCCCCAGGC GATCGGCCGG GGCGCGACGC TCGCCACGCT CGCGCAGCCG
CCGCTCGCGG GCGGGCTGCC GTCCGAGCTG CTGCGCCGCC GCCCCGACAT CGCCCAGGCC
GAACGCCAGC TCGCCGCCGC CGACAGTTCG CTCGCGGTCG CGCGCAAGCG CTTCCTGCCG
CAGCTCCGCC TGTCGGCCAG CGCCGGCGCG GCCTTCTCCA GCCTGCTCGA CGACCCGATC
ACCCTCTGGC AGGTCGGCGG CAGCATCCTT GCGCCGATCT TCCAGGGCGG GCGGCTGACC
GCGCAGGCCG AGGCGGCGGC CGGGCAGCGC GACCAGGCCG CCTTCGCCTA TCGCAAGGCG
GTGCTGACCG GCTTCCGCGA GGTCGAGGAC GCGCTGGCGT CGGTGCGGCG GATCGACGAG
CAGGTCGCAC TCGCGATCCA CCAGCGCGAC ACGCTCGCCG AAGCGCTGCG GCTGGCGACC
AACCGCTATC GCGAAGGCTA TTCGCCCTAT CTCGAACAGC TCGACGCGCA GCGCCAACTG
CTCGCCGCCG AGCTCAACCT CGCCCAGCTC CAGAGCGACG GCTTCGCCGC GCGGATCCAG
CTCTACCAGG CGCTGGGCGG CGGCTGGACG GCGGCGGACG AGGAATCCGG CCGACCCTGA
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| Protein sequence | MRRGSLLLPL LLGGCAAGHI KPVAVPPVDA PAAWRTAAPL SAVERDWWTG FGDPALTALV
DRALANNSDI GIAAGRVREA RANLAAARAT LLPTLDANLT GGRTRSISPF GTAEVQNAAQ
PQVQAAYEID LFGRLADQRS AARSAYLASE AARDAVRLAI ASATASGYVT LLGLDTRLDI
ARHTLAARGT SLKIARSRVS NGYSPKLELQ QAQAEYDATA AIVPQIELAV ARTEHGLNLL
TGDTPQAIGR GATLATLAQP PLAGGLPSEL LRRRPDIAQA ERQLAAADSS LAVARKRFLP
QLRLSASAGA AFSSLLDDPI TLWQVGGSIL APIFQGGRLT AQAEAAAGQR DQAAFAYRKA
VLTGFREVED ALASVRRIDE QVALAIHQRD TLAEALRLAT NRYREGYSPY LEQLDAQRQL
LAAELNLAQL QSDGFAARIQ LYQALGGGWT AADEESGRP
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