| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0264 |
|---|
| Symbol | |
|---|
| ID | 5196370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 272765 |
|---|
| End bp | 274201 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640579804 |
|---|
| Product | glutamate synthase (NADH) small subunit |
|---|
| Protein accession | YP_001260773 |
|---|
| Protein GI | 148553191 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.153251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0665114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGG CAACCGGATT TCTCGAGATC GAGCGCAAGG ACCGCGGCTA CACCAAGCCC
GGCGAGCGGC TGAAGCACTG GAACGAGTTC GTCGTCCCGC TCGCGGGCAA CGACCTGCGC
GACCAGGCGT CGCGCTGCAT GAACTGCGGC ATCCCCTTCT GTCACAATGG CTGTCCGGTG
AACAACATCA TCCCGGACTG GAACCATCTC GTGTTCGAGG ATGATTGGAA GAACGCGCTG
GAAGTTCTTC ATTCCACGAA TAATTTCCCG GAGTTCACCG GGCGCGTCTG CCCCGCCCCG
TGCGAGGCGG CCTGCACGCT GAACATCCAG GACACCCCCG TCACGATCAA GTCGATCGAA
TGCGCGATCG TCGATCGCGG CTGGGAGGAA GGCTGGATCA TGCCGCAGCC GCCGGCCCGC
AGGACCGGCA AGTCGGTCGC CGTCGTCGGA TCGGGCCCGG CCGGCCTCGC CTGCGCGCAG
CAGCTCGCCC GCGCCGGCCA CAGCGTCACC CTGTTCGAGA AGAACGACCG GATGGGCGGA
CTGCTCCGCT ACGGCATCCC CGACTTCAAG ATGGAGAAGC ATCTGATCAA CCGCCGGCTG
GTGCAGATGG AGGCCGAAGG CGTCACCTTC CGCACCTCGA CCGAAGTCGG CGTCCAGGTC
TCGCTCGACT CGCTGCGCGA GAATTTCGAC GCGATCGTGC TGTCGGGCGG CGCCGAGAAG
CCCCGCCCGC TGGAGGTTCC GGGCTTCGAG CTGTCGGGCG TCCGCTATGC GATGGAGTTC
CTGACCCAGC AGAACAAGCG GGTCGCCGGC GACGACGAGC TGCGGGCCGC GCCGCGCGGC
TCGCTGACCG CGACCGGCAA GCATGTCGTC GTGATCGGCG GCGGCGACAC CGGTTCGGAC
TGCGTCGGCA CCTCGAACCG CCAGGGCGCC GCCTCGGTCA CCCAGCTCGA GATCATGCCC
CGGCCGCCCG AGAAGGAGGC GAAGGCGCTG TCCTGGCCGA ACTGGCCGCT CAAGCTGCGC
ACTTCGTCGA GCCATGAAGA GGGCTGCGAG CGCGACTGGG CGGTCGTCAC CAGGCGCGCG
ATCGGCACCA ACGGCCAGCT CACCGCGCTC GAATGCGCGC GGGTCGAGTG GGTCGACGGC
CGGATGCAGG AGGTGCCGGG CAGCGCGTTC ACGCTGAAGG CCGACCTCGT CCTGCTGGCG
ATGGGCTTCC TCGGCCCGAA CACCGCCGGA ATGATCGAGC AGGCCGGCGT CGAGCTCGAT
CCGCGCGGCA ACGTCAAGGC CGACACCAGC GGCTATGCGA CCAGCCAGGA CGACATCTTC
GCCTGCGGCG ACATGCGGCG CGGCCAGAGC CTGATCGTCT GGGCGATCCG CGAGGGCCGC
CAATGCGCCC GCGCGGTCGA CCTCCACCTG ATGGGCCGCA CCGACCTGCC GAACTGA
|
|---|
| Protein sequence | MGKATGFLEI ERKDRGYTKP GERLKHWNEF VVPLAGNDLR DQASRCMNCG IPFCHNGCPV
NNIIPDWNHL VFEDDWKNAL EVLHSTNNFP EFTGRVCPAP CEAACTLNIQ DTPVTIKSIE
CAIVDRGWEE GWIMPQPPAR RTGKSVAVVG SGPAGLACAQ QLARAGHSVT LFEKNDRMGG
LLRYGIPDFK MEKHLINRRL VQMEAEGVTF RTSTEVGVQV SLDSLRENFD AIVLSGGAEK
PRPLEVPGFE LSGVRYAMEF LTQQNKRVAG DDELRAAPRG SLTATGKHVV VIGGGDTGSD
CVGTSNRQGA ASVTQLEIMP RPPEKEAKAL SWPNWPLKLR TSSSHEEGCE RDWAVVTRRA
IGTNGQLTAL ECARVEWVDG RMQEVPGSAF TLKADLVLLA MGFLGPNTAG MIEQAGVELD
PRGNVKADTS GYATSQDDIF ACGDMRRGQS LIVWAIREGR QCARAVDLHL MGRTDLPN
|
|---|
| |