Gene Swit_0161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0161 
Symbol 
ID5199106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp154172 
End bp155143 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content70% 
IMG OID640579700 
ProductP-type conjugative transfer ATPase TrbB 
Protein accessionYP_001260670 
Protein GI148553088 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID[TIGR02782] P-type conjugative transfer ATPase TrbB 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.654674 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCCAGC CCTCTGCCAT CGTCCATGCG CGCAGCACTT CGATGCTGCG CAGCGCGCTC 
GGGCCGGCGA TCGCCGCCTG GCTCGACGAC AATGGCGTCG CCGAGGTCAT GCTCAACGCC
GACGGCCGGT TGTGGGTCGA CCGGCTCGAC AGCGGCATGG CCGAGACCGG CGAGCGCCTG
ACCGCGGCAC AGGCCGAGCG CATCATCCGC CTTGTCGCCC ATCACGTCGG GGCGGAGGTC
CACCGCGCAA CGCCCCGCGT GTCAGCCGAG CTGCCCGAGA GCGGCGAGCG CTTCGAAGGC
CTGCTGCCGC CTGTGGTCGC GGCACCCGTC TTCTCGATCC GGCGGCCGGC GAGTTTGCCG
CTGGCGCTCG CCGACTATGT CGCCGCCGGT ACCATGACCG CGACGGCCGC CGCCTTCCTG
GCCGGGGCAG TCAAGGATCG CGCCAATATT CTCGTCGCGG GCGGCACATC GACCGGCAAG
ACGACGCTCA CCAATGCGCT GCTCGCGGTC GCGTCCGACA GCGACGACCG CATCATCCTG
ATAGAGGATA CCCGCGAGCT GCGCTGCGAC GCGGCTAATG TCCTGGCGCT GCGCACTGCG
CCGGGGGTCA CGATGACCGA CCTGGTACGC TCCAGCCTGC GCCTGCGGCC CGATCGCATT
CCGGTCGGCG AAGTGCGAGG CCCGGAAGCG CTCGACCTGC TCAAAGCCTG GGGCACCGGC
CATCCCGGCG GGATCGGTAC GATTCACGCC GGCACCGCGA CCTCCGCGCT CCACCGGCTC
GAACAGCTCA TCCTCGAAGC CATCGCGCAC GTCCCGCGCC CCCTGATCGC CGAGACGATC
GACGTCATCG CGGTGCTCAG CGGTCGCGGC ACCGAGCGCC GCCTGTCCGA GCTGGTCCGT
GTCGAAGGGC TCGATGCGGC CGGCGCCTAC TGCCTCCGCA ACATCCATAC AGCACAGGGA
GTCACCGCAT GA
 
Protein sequence
MTQPSAIVHA RSTSMLRSAL GPAIAAWLDD NGVAEVMLNA DGRLWVDRLD SGMAETGERL 
TAAQAERIIR LVAHHVGAEV HRATPRVSAE LPESGERFEG LLPPVVAAPV FSIRRPASLP
LALADYVAAG TMTATAAAFL AGAVKDRANI LVAGGTSTGK TTLTNALLAV ASDSDDRIIL
IEDTRELRCD AANVLALRTA PGVTMTDLVR SSLRLRPDRI PVGEVRGPEA LDLLKAWGTG
HPGGIGTIHA GTATSALHRL EQLILEAIAH VPRPLIAETI DVIAVLSGRG TERRLSELVR
VEGLDAAGAY CLRNIHTAQG VTA