Gene Swit_0153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0153 
Symbol 
ID5200261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp148278 
End bp148895 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content63% 
IMG OID640579692 
ProductTetR family transcriptional regulator 
Protein accessionYP_001260662 
Protein GI148553080 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.10564 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.9984 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCTACTC GTATTCCCGC ATCTTCGGGA TCCATGCGCA AACAGCCTCG CCAGGCGCGG 
TCGCGTGCCA CCGTGGAGGC GATTCTGACG GCGGGCGCTC AGCTTTTGGC GGAGGTCGGA
TGGCTGAAGG TCACGACCAA TCGCGTCGCC GAGATCGCCG GAGTCAGCAT CGGCTCATTG
TACCAGTATT TTCCCGACAA GGCGGCCCTC GTCGAAGCGA TAACCCGGCG CCATTTCGAT
GAAATCCTGG ACGTGCTGCG GGAGATCGAC GGCTGCGATC TGTCGCTGGA GGCGCGGACG
GAGCGGCTCG TGGCCGGGAT GATCAGGATT CATGGCGGCA ATCCACGTCT GCATCGGGTG
CTTCTCAGGG ACGCGCCGGC CAGTGAAAGC CTGCAGGCGA CGCATGCATT GTTCGAAGCC
GAATATCTCG GACGCTATGA CAGCTTTCTC GCGAGAGCGG CATGGCGCGG AGCCGATCGA
GGGACCGCGG CGCAAATTCT GTCCTCGGCG ATCGCCGGCG TGGTTCATGA CGCAGCGGAA
AGGGGAACGC TGCACTCCGC CGACGTCCGA CGCGAGCTCA TCTCGGTCGT CCTCGCCTAT
GTGCGTCATC GGCAATGA
 
Protein sequence
MATRIPASSG SMRKQPRQAR SRATVEAILT AGAQLLAEVG WLKVTTNRVA EIAGVSIGSL 
YQYFPDKAAL VEAITRRHFD EILDVLREID GCDLSLEART ERLVAGMIRI HGGNPRLHRV
LLRDAPASES LQATHALFEA EYLGRYDSFL ARAAWRGADR GTAAQILSSA IAGVVHDAAE
RGTLHSADVR RELISVVLAY VRHRQ