Gene Swit_0065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0065 
Symbol 
ID5196944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp62610 
End bp65048 
Gene Length2439 bp 
Protein Length812 aa 
Translation table11 
GC content72% 
IMG OID640579604 
ProductCheA signal transduction histidine kinase 
Protein accessionYP_001260576 
Protein GI148552994 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0643] Chemotaxis protein histidine kinase and related kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGATC TGCTCGGCGA CTTCGTCGCG GAGACACGCG AGACCCTCGA CGCCCTGTCG 
GGCGAGATCG TCGCGTGGGA ACTCGCGCCC GACGATCGCT CGCGGCTCGA TGCGATCTTC
CGCTTCGTCC ATACCGTGAA GGGAAGCTGC GGTTTCCTCG ATCTGCCGCG CCTCGAGAAG
CTCAGCCACG CGGCGGAGGA CGTGCTCGCC GACGTCCGCG CCGACCGTCG CCGCCCCGAT
CCCGCGCTGG TCAGCGCCGT GCTGGCGGTG ATCGACCGCA TCGCCGAACT GGCCGACGCG
ATCGAGAGCG GCCGGACCGT CCCCGACGAG GACGATGCCC GCCTGATCGC GGCGCTTCGG
CCCGTGTCCG AGGCCGTCGT CGATACCGCC GATGCCGACG ACGTCGCGCT CGCCGAGGCG
CTGGAGGCGA TCCGGATCGC CGAGGAGATG GACGAGGAGG AGGCGGTCGT CCCGGTGCTG
GTCGAAGCGC CGGCCGCCGC GGCGCCGGCC GGCCCGCGCG CCGTCTCGCG CAGCATCCGC
CTGCCGGTCG ACCTGCTCGA CCGGATGATG GCGGGCGTGT CCGACATGGT GCTGGCGCGC
AACGAGCTGG CGCGCCGCCT GCGCGAGAGC GGCGCCGAAT CGAACACCGA GGTCGCCTTC
GAGCGGCTGT CGCATTGCAT CGCCGAGATG CGCGACGCGA TCACCCGCAC CCGCATGGCG
CGGGTCGAGC ATCTCTTCAC CGCGCTGCCG CGCATGGTCC GCGACATCTC CGCCGAGCTG
GGCAAGCTGG TCCAGCTCGA GATCGACGGC GGCGACGTCG AGCTCGATCG CGAGATGATC
GAGATGATCC GCGATCCGCT GACCCATATC GTCCGCAACG CGATCGACCA TGGCATCGAG
CCGCCCGAGG CGCGGGTGCT CGCCGGCAAG CCGGTGGCGG GGCGTCTCCA CGTCAGCGCC
CGGCAGGTCG GCAACCAGAT ATTGATCGAG GTGATCGACG ACGGCCGCGG CATCGATGCC
GACCAGCTCG TCGACAAGGC GGTCGCCGCC GGCATTCTCG GCCGGGAGCG CGCCGCGACG
CTGAGCTGGG AACGCAAGCT CGAGCTGATC TTCGCGCCCG GCCTGTCGAC CGCGCGGGAG
GTGACCGCGA TTTCGGGACG CGGCGTCGGC ATGGACGTCG TCCGCGCCAA TGTCGAACGG
ATCGGCGGCC TCGTCGACAT CGACAGCCGG CCGGGGCAGG GGCTGCGCCT GACGCTGCGC
GTGCCGCTGA CCCTCACCAT CATCCCCGCG CTGACGATCA GCACCGGCGG CCAGCATTTC
GCGATTCCCC GATCGGCGAT CGACGAGATC GTCCGCGTCG GCGGCGACGC CGTCCGCATG
GGGACGCTGG GCGGCGCCGA TCTCGTCTTC ATCCGCGGCG TCCGCGTGCC GGTGGTGTCG
CTCGGCGCGG TGCTCGGCCT CGAACGGGGC GCACAGGCCA ATCTCGTCGT GCTCAAGCTG
TCGGGCGGCG CGCGCTATGC GCTCGCGGTC GACGCGGTCC ACGACCATGA GGAGCTGGTG
GTCAAGCCCG CCGCGCCGGT GGTGATGGCC TGCGGCATCT ATGGCGGCAC GACCCTGCCG
GACAACAGCC GGCCGATGCT GCTGCTCGAC GTCGCGGGCG TCGCCGAGAA GGCGGGCGTC
CGCCGCGACG ACCAGGCGGC GGTCGAGCCG GTGGCCGAGG AGGGCGAGGA GGAGCTGCAC
GAGAAGGGCG CCGTGCCCGT CCTGCTGTTC CGTGACCTCG ACGGGGTCGA GCGCGGCGTG
CCGCTGGCGC TGGTCGAGCG GATCGAGGAC TGCTTCTCCG CCTCGGTCAG CCACAGCGCG
GGCCGGATGC GCCTGAACAT CGACGGGCGG CTGGTGCCGC TGGTGTCGTG CGGCGCGCCG
ATCATCGAGG CCAAGGTCCG CGTGCTGCGG ATGCGCGACG GGGCCGAGGA GCTGGCCTAT
GCGATCGACA GCGTCATCGA CATCGTCCCG GTCGCGATCG AGCTGCAGCG CAGCGCCGTC
GCCGGTCCGG TCGCCGGGGT GATGCTGGTC GAGGAGCGGC CGGTCGAGTT CCTCGACGCC
TTCTGGCTGT TCGCGCAGGG GCTGGGCAGC GAGCCGGCCG CCGAGCAGCG CCCGGTCTGC
CTGCTGTCGG ACGAGGACCC CTGGACGCGC CAGGTGCTCG CGCCGCTGGT CGAAGGCGCC
GGCTATCGGA TCATCTATGC GCCGGAGGAG GGGCCAGCCG CCGATCTCGT CATCGTCGCC
GACGGTGCCG CGGCCGACGG GCCGGCCGAA GCGGCGGCGG TGCTGCGGCT GCGCCAGCAT
GCCGAGGATC GCGGCGCCTC GCCCGACAGC CTGTGGCGCT ACGACCGGGC CGGCCTCACC
GCCGAGTTGC GCCGGTATTG GAACAAGCGG AGCGCCTGA
 
Protein sequence
MDDLLGDFVA ETRETLDALS GEIVAWELAP DDRSRLDAIF RFVHTVKGSC GFLDLPRLEK 
LSHAAEDVLA DVRADRRRPD PALVSAVLAV IDRIAELADA IESGRTVPDE DDARLIAALR
PVSEAVVDTA DADDVALAEA LEAIRIAEEM DEEEAVVPVL VEAPAAAAPA GPRAVSRSIR
LPVDLLDRMM AGVSDMVLAR NELARRLRES GAESNTEVAF ERLSHCIAEM RDAITRTRMA
RVEHLFTALP RMVRDISAEL GKLVQLEIDG GDVELDREMI EMIRDPLTHI VRNAIDHGIE
PPEARVLAGK PVAGRLHVSA RQVGNQILIE VIDDGRGIDA DQLVDKAVAA GILGRERAAT
LSWERKLELI FAPGLSTARE VTAISGRGVG MDVVRANVER IGGLVDIDSR PGQGLRLTLR
VPLTLTIIPA LTISTGGQHF AIPRSAIDEI VRVGGDAVRM GTLGGADLVF IRGVRVPVVS
LGAVLGLERG AQANLVVLKL SGGARYALAV DAVHDHEELV VKPAAPVVMA CGIYGGTTLP
DNSRPMLLLD VAGVAEKAGV RRDDQAAVEP VAEEGEEELH EKGAVPVLLF RDLDGVERGV
PLALVERIED CFSASVSHSA GRMRLNIDGR LVPLVSCGAP IIEAKVRVLR MRDGAEELAY
AIDSVIDIVP VAIELQRSAV AGPVAGVMLV EERPVEFLDA FWLFAQGLGS EPAAEQRPVC
LLSDEDPWTR QVLAPLVEGA GYRIIYAPEE GPAADLVIVA DGAAADGPAE AAAVLRLRQH
AEDRGASPDS LWRYDRAGLT AELRRYWNKR SA