| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0061 |
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| Symbol | |
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| ID | 5196940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 59881 |
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| End bp | 60846 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640579600 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_001260572 |
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| Protein GI | 148552990 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.102185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGGG GGAAATCGAC ATTGCATGCC GTGGTGCCGC AGGATGCCGA GGGCTGGCGG
CTCGACCGGG CGTTGGCCGC GGCGCTGCCG ACATTGTCGC GCGAGCGGCT GAAGGCGCTG
ATCTCCTCCG GCCAGGTCAG CCACGCCGAC GGCGCGCTCG CCCGCGATCC TGCGATGAAG
GTCGCGCCCG GCGCGCGCTT CGCGGTGATC GTCCCCGATC CCGCCCCCGC GCACAACGCG
GCGCAGGATA TCCCGCTCGT CGTCGCCTAT GAGGACGAAC ATCTGATCGT CATCGACAAG
CCCGCCGGGC TGGTCGTCCA TCCGGCGGCC GGCAATCCCG ACGGGACGCT GGTCAACGCG
CTGCTCCACC ATTGCCGGGG CAGCCTGTCG GGGATCGGCG GGGTCGAACG GCCCGGCATC
GTCCACCGCA TCGACAAGGA CACGTCGGGG CTGATGGTCG CCGCCAAGAC CGATCCGGCC
CATGTCGGGC TGGCGGCGCA GTTCGCCCGG CACAGCATCG ACCGGCGCTA CCGGGCGATC
GTGGCGGGAA CGCCGCGCCT TGCTGCCGGG ACGGTCGACG CGCCGCTCGC GCGCTCGACC
GCCGACCGCA AGAAGATCGC GATCGTCGCC GACGGGCGCG GCAAGCGCGC CGTCACCCAT
TACAGCGTGA TCGAGCCGCT GCGCCGCGCC GCGCTGGTCG AATGCCGGCT GGAGACGGGT
CGCACCCACC AGGTGCGCGT CCACATGGCC TCGCTCGGCC ATCCGCTGCT CGGCGACCCG
GTTTACGGGC GCAGCCGGCC GGAACATCGC GAGTTGCTCA ACCGTTTGAA ATTCCATCGC
CAGGCGCTGC ACGCGGCCCG GCTGGGCTTC ATCCATCCGG TGACAAGCGC GGCTTTATCT
TTCGATAGCG AAATTCCGCA GGATATGCAG GATTTGTTCA GCGAACTGCG TGTAAGGGTG
CTATAG
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| Protein sequence | MTGGKSTLHA VVPQDAEGWR LDRALAAALP TLSRERLKAL ISSGQVSHAD GALARDPAMK
VAPGARFAVI VPDPAPAHNA AQDIPLVVAY EDEHLIVIDK PAGLVVHPAA GNPDGTLVNA
LLHHCRGSLS GIGGVERPGI VHRIDKDTSG LMVAAKTDPA HVGLAAQFAR HSIDRRYRAI
VAGTPRLAAG TVDAPLARST ADRKKIAIVA DGRGKRAVTH YSVIEPLRRA ALVECRLETG
RTHQVRVHMA SLGHPLLGDP VYGRSRPEHR ELLNRLKFHR QALHAARLGF IHPVTSAALS
FDSEIPQDMQ DLFSELRVRV L
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