| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0043 |
|---|
| Symbol | aspS |
|---|
| ID | 5200502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 43785 |
|---|
| End bp | 45566 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640579580 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_001260554 |
|---|
| Protein GI | 148552972 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0000554718 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCACG CCTATCGCAC GCACAATTGC GGCCAGCTCC GGGCCCAGGA CGTCGGGTCC
CAGGTCCGCC TGTCGGGCTG GGTGCATCGC AAGCGCGATC ATGGCAACCT GCTGTTCGTC
GATCTGCGCG ACCATTACGG CCTGACGCAG ATCGTCACCG ACATCGAGTC GGAGGCTTTC
CGGCAGCTCG AGCGGTTGCG CGTGGAGTCG GTCGTGACGA TCACCGGCGA CGTCGTCGCC
CGTGCCGGCG AGGCGGTGAA CCCCAATCTC GCGACCGGCG AGATCGAGAT CCGCGCCCGC
GAGGTCTCGG TCCAGTCGAC CGCGCAGGAA CTGCCGCTGC CGGTGGCGGG CGAGGCCGAC
TATCCCGAGG ATATCCGCCT GCGCTATCGC TTCCTCGACC TGCGCCGCGA TCGCATCCAT
GCCAATATCG TGCTGCGTTC GAACGTGATC GCCTCGATCC GCCGCCGCAT GATCGACCAG
GGCTTCACCG AATATCAGAC GCCGATCCTG ACCGCCTCTT CGCCGGAAGG CGCGCGCGAC
TTCCTGGTGC CGAGCCGCAT CCATCCGGGC AAATTCTACG CGCTGCCGCA GGCGCCGCAG
ATGTTCAAGC AACTGCTGAT GGTGGCCGGC TTCGACCGCT ATTTCCAGAT CGCCCCCTGC
TTCCGCGACG AGGACGCCCG CGCCGACCGG TCGCCGGGCG AATTCTACCA GCTCGACTTC
GAGATGAGCT TCGTCACCCA GGAGGACGTG TTCGCCGCGA TCGAGCCGGT GCTGCACGGC
GTGTTCGAGG AATTCGCCAA TGGCCGCGCG GTCACCCCGG CGCCGTTCCC GCGCATCGCC
TATCGCGACG CGATGCTGCG CTACGGCTCG GACAAGCCCG ACCTGCGCAA CCCGCTGGAG
ATCACCGACG TCACCGAGCA TTTCCAGGGC TCGGGCTTCG GCCTGTTCGC GCGGATCGTC
GAGGGCGGCG GCGTCGTCCG CGCCATCCCG GCGCCGGGCG CGGGTGCGAA GAGCCGCAAA
TTCTTCGACG ACATGAACGA CTGGGCGCGC GCCCAGGGCC ATGCCGGGCT CGGCTACATC
AACATCAAGG GCGGCGAGGC CGGCGGCCCG ATCGCCAAGA ACCATGGCGA GGAGGCGACC
GCGAAGCTGA TCGCGGCGCT GGGCCTCGGC CCCGATGACG GCGTGTTCTT CGCGGCGGGC
AAGGAACTGG CGACGGCCAA GCTGGCGGGC GCCGCGCGCA CCCGCGTCGG CGAGGAACTG
GGCCTGATCG AGCAGGGCGT GTTCAAATTC TGCTGGGTCG TCGACTTCCC GATGTTCGAA
TATGACGAGG ACGCGAAGAA GATCGACTTC AGCCACAACC CCTTCTCGAT GCCGCAGGGC
GAGATGGAGG CGCTGGAGAC GATGGATCCG CTCGACATCC TCGCCTATCA GTACGACATC
GTCTGCAACG GCGTGGAGCT GTCGTCGGGC GCGATCCGGA ACCACCGGCC CGAGATCATG
TACAAGGCGT TCGAGATCGC CGGCTACAGC CAGGAGCAGG TCGAGGAGAA TTTCTCGGGC
ATGCTCAACG CCTTCAAGTT CGGCGCGCCG CCGCACGGCG GATCGGCCCC CGGCATCGAC
CGCATCGTCA TGCTGCTCGC CGACGAGCCG AACATCCGCG AGGTCGTGCT GTTCCCGATG
AACCAGAAGG CCGAGGACCT GATGATGGGC GCGCCCTCGC AGGTCAGCCT GAAGCAGCTC
CGCGAGCTGA ACATCCGGGT GGTCGAGCAG AGCAAGCAGT AA
|
|---|
| Protein sequence | MMHAYRTHNC GQLRAQDVGS QVRLSGWVHR KRDHGNLLFV DLRDHYGLTQ IVTDIESEAF
RQLERLRVES VVTITGDVVA RAGEAVNPNL ATGEIEIRAR EVSVQSTAQE LPLPVAGEAD
YPEDIRLRYR FLDLRRDRIH ANIVLRSNVI ASIRRRMIDQ GFTEYQTPIL TASSPEGARD
FLVPSRIHPG KFYALPQAPQ MFKQLLMVAG FDRYFQIAPC FRDEDARADR SPGEFYQLDF
EMSFVTQEDV FAAIEPVLHG VFEEFANGRA VTPAPFPRIA YRDAMLRYGS DKPDLRNPLE
ITDVTEHFQG SGFGLFARIV EGGGVVRAIP APGAGAKSRK FFDDMNDWAR AQGHAGLGYI
NIKGGEAGGP IAKNHGEEAT AKLIAALGLG PDDGVFFAAG KELATAKLAG AARTRVGEEL
GLIEQGVFKF CWVVDFPMFE YDEDAKKIDF SHNPFSMPQG EMEALETMDP LDILAYQYDI
VCNGVELSSG AIRNHRPEIM YKAFEIAGYS QEQVEENFSG MLNAFKFGAP PHGGSAPGID
RIVMLLADEP NIREVVLFPM NQKAEDLMMG APSQVSLKQL RELNIRVVEQ SKQ
|
|---|
| |