| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0042 |
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| Symbol | |
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| ID | 5200501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 42513 |
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| End bp | 43700 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640579579 |
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| Product | ribonuclease D |
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| Protein accession | YP_001260553 |
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| Protein GI | 148552971 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00728921 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGAAA GCATGCACAT TCACCCCCTG ATTACCGACA GCGCGACGCT CGCCAATCTC
TGCACCCGCC TCGCCGCCTC GCCCTACGTC GTGGTCGACA CCGAATTCAT GCGCGAGAGC
ACCTATTGGC CCGACCTCTG CCTGATCCAG ATCGCCAACA GCGAGGAAGC CGCCGCGATC
GACCCCAAGG CGAAGGACAT CGACCTCACG CCGCTGCTCG ACCTGCTGGT CGAGAATGAG
GAGGTGCTCA AGGTCTTCCA TGCCGGCGGC CAGGACCTGG AGATCGTCCA CAACCTGACC
GGCAAGACCC CCTATCCGCT GTTCGACACG CAGGTCGCGG CGATGGCGAT GGGGCTGGGC
GAGCAGATCG GCTATTCGAA CCTGGTCGAG ACGATGCTGG GCATCAAGCT CGACAAGGGC
GCGCGCTTCA CCGACTGGGC GCGCCGCCCG CTCGACAAGC GGCAGATCGA CTATGCGATC
GGCGACGTCA CCCATCTCTC GGCGATCTTC CCCCGCATGC TGGAGAGGCT GCGCAAGTCG
GGACGCGGCG GCTGGCTCGA CAACGAGATG GAACGACTCG GCGATCCCGC CAGCTACGCC
AACCTGCCCG AACTGGCCTG GACCCGCATC CGCCTGCCCA GCCGCAAGCC CGAGGTGCTC
GGCCGGCTCA AGGCGATCGC CGCCTGGCGC GAGCGCGAGG CGCGGTCGAA GAACCTGCCG
CGCGGCCGCA TCGCCAAGGA CGAGACGCTG GCCGACCTCG CCTCGCATCC GCCCAAGGTG
CAGGCCGACC TGTCGCGGGT GCGCGGCCTG TCGCCGAGCT GGGCGCAGAA CGACATCGGC
GCCCGGCTGA TGTCCTCGAT CGCCGATGCC GAGCCGCTGC CCGATGCCGA GATGCCGCCG
CGCGAGGACC GCAAGCCCGG TCTCGGCAAG GAAGGCGCGC TGATCGCCGA CCTGCTCAAG
CTCCTCCTCA AGGTCCGCTC GCGCGACGCC GACGTCGCGC CGCGCCTGAT CGCGCGCGCC
GACGATCTCG AACTGCTCGC CGCGGGCGTC CGCGACCTGC CGATGCTCGA CGGCTGGCGC
TTCGACATCT TCGGCAAGGA TGCGCTGGCG CTGGTCGAGG GCCGGCTGGC GTTCAGCGTG
CGCAACGGCC GGATGGTGAT GTCGGCGCTC GACGGCGACC AAGGGTAA
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| Protein sequence | MHESMHIHPL ITDSATLANL CTRLAASPYV VVDTEFMRES TYWPDLCLIQ IANSEEAAAI
DPKAKDIDLT PLLDLLVENE EVLKVFHAGG QDLEIVHNLT GKTPYPLFDT QVAAMAMGLG
EQIGYSNLVE TMLGIKLDKG ARFTDWARRP LDKRQIDYAI GDVTHLSAIF PRMLERLRKS
GRGGWLDNEM ERLGDPASYA NLPELAWTRI RLPSRKPEVL GRLKAIAAWR EREARSKNLP
RGRIAKDETL ADLASHPPKV QADLSRVRGL SPSWAQNDIG ARLMSSIADA EPLPDAEMPP
REDRKPGLGK EGALIADLLK LLLKVRSRDA DVAPRLIARA DDLELLAAGV RDLPMLDGWR
FDIFGKDALA LVEGRLAFSV RNGRMVMSAL DGDQG
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