Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0042 |
Symbol | |
ID | 5200501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 42513 |
End bp | 43700 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640579579 |
Product | ribonuclease D |
Protein accession | YP_001260553 |
Protein GI | 148552971 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.00728921 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACGAAA GCATGCACAT TCACCCCCTG ATTACCGACA GCGCGACGCT CGCCAATCTC TGCACCCGCC TCGCCGCCTC GCCCTACGTC GTGGTCGACA CCGAATTCAT GCGCGAGAGC ACCTATTGGC CCGACCTCTG CCTGATCCAG ATCGCCAACA GCGAGGAAGC CGCCGCGATC GACCCCAAGG CGAAGGACAT CGACCTCACG CCGCTGCTCG ACCTGCTGGT CGAGAATGAG GAGGTGCTCA AGGTCTTCCA TGCCGGCGGC CAGGACCTGG AGATCGTCCA CAACCTGACC GGCAAGACCC CCTATCCGCT GTTCGACACG CAGGTCGCGG CGATGGCGAT GGGGCTGGGC GAGCAGATCG GCTATTCGAA CCTGGTCGAG ACGATGCTGG GCATCAAGCT CGACAAGGGC GCGCGCTTCA CCGACTGGGC GCGCCGCCCG CTCGACAAGC GGCAGATCGA CTATGCGATC GGCGACGTCA CCCATCTCTC GGCGATCTTC CCCCGCATGC TGGAGAGGCT GCGCAAGTCG GGACGCGGCG GCTGGCTCGA CAACGAGATG GAACGACTCG GCGATCCCGC CAGCTACGCC AACCTGCCCG AACTGGCCTG GACCCGCATC CGCCTGCCCA GCCGCAAGCC CGAGGTGCTC GGCCGGCTCA AGGCGATCGC CGCCTGGCGC GAGCGCGAGG CGCGGTCGAA GAACCTGCCG CGCGGCCGCA TCGCCAAGGA CGAGACGCTG GCCGACCTCG CCTCGCATCC GCCCAAGGTG CAGGCCGACC TGTCGCGGGT GCGCGGCCTG TCGCCGAGCT GGGCGCAGAA CGACATCGGC GCCCGGCTGA TGTCCTCGAT CGCCGATGCC GAGCCGCTGC CCGATGCCGA GATGCCGCCG CGCGAGGACC GCAAGCCCGG TCTCGGCAAG GAAGGCGCGC TGATCGCCGA CCTGCTCAAG CTCCTCCTCA AGGTCCGCTC GCGCGACGCC GACGTCGCGC CGCGCCTGAT CGCGCGCGCC GACGATCTCG AACTGCTCGC CGCGGGCGTC CGCGACCTGC CGATGCTCGA CGGCTGGCGC TTCGACATCT TCGGCAAGGA TGCGCTGGCG CTGGTCGAGG GCCGGCTGGC GTTCAGCGTG CGCAACGGCC GGATGGTGAT GTCGGCGCTC GACGGCGACC AAGGGTAA
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Protein sequence | MHESMHIHPL ITDSATLANL CTRLAASPYV VVDTEFMRES TYWPDLCLIQ IANSEEAAAI DPKAKDIDLT PLLDLLVENE EVLKVFHAGG QDLEIVHNLT GKTPYPLFDT QVAAMAMGLG EQIGYSNLVE TMLGIKLDKG ARFTDWARRP LDKRQIDYAI GDVTHLSAIF PRMLERLRKS GRGGWLDNEM ERLGDPASYA NLPELAWTRI RLPSRKPEVL GRLKAIAAWR EREARSKNLP RGRIAKDETL ADLASHPPKV QADLSRVRGL SPSWAQNDIG ARLMSSIADA EPLPDAEMPP REDRKPGLGK EGALIADLLK LLLKVRSRDA DVAPRLIARA DDLELLAAGV RDLPMLDGWR FDIFGKDALA LVEGRLAFSV RNGRMVMSAL DGDQG
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