| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5005 |
|---|
| Symbol | |
|---|
| ID | 5195888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009508 |
|---|
| Strand | - |
|---|
| Start bp | 122433 |
|---|
| End bp | 123377 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640579440 |
|---|
| Product | TrbL/VirB6 plasmid conjugal transfer protein |
|---|
| Protein accession | YP_001260388 |
|---|
| Protein GI | 148550958 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 0.0328089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.438653 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCCA CACTCTTCGC GGATATCTAC ACCAACATCG ACGGGAAGCT CGATCTCTTC
CTGAACGAGC GTCTCAACAA CGTCATCGAT GTCGTGCGGG GACCGCTGGC GCTTGGCTTG
GTCATCTACA TCGCGCTGTT CGGGTATATG GTGATGCGCG GTATCGTCAG CGAGCCTTGG
GGCGAGCTGG TGTACCGGAT GGTGAAGCTC TGCCTCCTCT ATGTTGCAGC CACAACCGTC
GCCTACTCCG AGTGGATCAC GAATCCGCTC TTTCATGGGA TGCCGGACGC CATCTCACAG
GCGCTGGCGG GCAAGACCAT CACTAGCGTC GGTTCGGTGT TCGACGATTA TTTTGGCCAG
GTCGATTCCC TCGTTTTGAT CATCCGAACC GAAGCCGCGA CCTATCTCGA CATTAATCCG
TGGAAGCTCG TTCTGCTCAC GCTGGCGGTG GCGATTTATG GATTGGCGGG CCTCTCCGCA
GCAATCGGAT TTGCGATAAC CGTGTTCGCG AAGGTGGCGC TCGCCGTCGT GATCGCGCTT
GGTCCGATCT TCATAGCGTT ATCGCTCTTC GAAACCACGC GTCGCTTCTT CTACGGATGG
CTCGGGCAGG TATTCAACTA TATCGTCCTA ATGGCGGTGA TCATCGCCAT CACAGCTCTG
ATCACCGATC TTGGTGCCAC GGCGCTGACT GCGGCCGAAG GCACGCCGGA CGTGACGATC
GGCGCTGTCT TGTTTGCGGT CTACATCTTC CTTGGGACGA TATTCTTCTT TCAGGCCCCG
TCGATCGCGA CCGGCATTGC GGGGGGCGCT GCGGCCGGCG TCGGCGCTTT TGCCGGCTCG
GCCTGGGGGA CCATGGCGGC ACCGTTCCAG CAACGTCGCA GCGCTCGCAA CAGTCGCAAT
CTCGAACGTG CCGCCCAGCG CGGTGGTTCG GTGAGCCGCG CATGA
|
|---|
| Protein sequence | MASTLFADIY TNIDGKLDLF LNERLNNVID VVRGPLALGL VIYIALFGYM VMRGIVSEPW
GELVYRMVKL CLLYVAATTV AYSEWITNPL FHGMPDAISQ ALAGKTITSV GSVFDDYFGQ
VDSLVLIIRT EAATYLDINP WKLVLLTLAV AIYGLAGLSA AIGFAITVFA KVALAVVIAL
GPIFIALSLF ETTRRFFYGW LGQVFNYIVL MAVIIAITAL ITDLGATALT AAEGTPDVTI
GAVLFAVYIF LGTIFFFQAP SIATGIAGGA AAGVGAFAGS AWGTMAAPFQ QRRSARNSRN
LERAAQRGGS VSRA
|
|---|
| |