Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_5000 |
Symbol | |
ID | 5195893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009508 |
Strand | - |
Start bp | 116346 |
End bp | 118358 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640579435 |
Product | TRAG family protein |
Protein accession | YP_001260383 |
Protein GI | 148550953 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 51 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCCGCC TGTCGGACGC ACGACCGCTC ACTAGGGTCG TAATCGTCGC GGGGGTTCTC GCGGCAACCT TTTTGGCATG CGCCCTGTGC GCGGTGCTGG TCGCACTGGT CGGCCTGAAC CAGATCGGCC CGCGAATGCA GATCTCGGCG ATACCCGCAT GGCTCTGGTA TTATCGCGGC GATCCGCTGC TTCATCTGTG GCTGAAGCGA GGCGCGCTGA TCAGCGGCGC GATCGCTTTC GTCATCCTGC TCATCATCCT GAAGCGAGGG CGCACGCTCC ACGGCGAAGC CAGGTTCGCG CGTGAAAGTG AAATCCGCCG CGAACATCTG CGCAGCAACA GCGGGATCAT CGTCGGACAG AAAGGCGGCC GCTATCTCGT TTTCGGCGGC ACCGAACATG TCTTGCTCGA GGCGCCGACG CGCGCCGGCA AGGGCGTCGG CGTTGTGATC CCCAATCTCC TGAGCTGGGC AGACTCGGTG GTGGTGCTCG ACGTGAAGCG CGAGAATTGG GACATCACCG CTGGTTTTCG CGCGCGGCAT GGCCAGGCGG TCTATCTGTT CGATCCGCTG GATCCTGAAG GGCGAAGCGC CCGCTACAAT CCCTTGAGTT TCATCGACCG GCTCGACGAC ACCGATGTGA TCAATGAACT CCAGAAGATC GGCGGCATGC TGTTTCCGGC CCCGGAAAAG GCTGATCCGT TCTGGGCGGA AGCGGCGCGC GCCGCCTTTG TCGGCGTCGG CGCCCTTGTC GCAGCCAACC CCGCCCTCCC CTTCACGATC GGCGAAATCT ATCGGCGGCT GACAGCGGGC GATCCGAAGG TCGAACTCCC CAAGGTCGTC GAGGAGGCGC AGCAGCGCGG GCAGCGGCTG AGCCAGGCGT GTGTGTCGGC GCTGAGCGAC TTCACCTCCG CGTCCGACAA CACCTTCTCC GGCATCAAAC AGACGATCAC CTCGAAGCTC AATCTGTGGC TCAACCCCTA TGTCGATGCT GCGACATCGG AGACAGATTT TGATCTGCGG CAGGTCCGGC GCGAGCGGAT ATCGATCTAT CTTGGGGTGT CGCCCGACAA TATCGACCGG ATCGCGCCCG TCTATAACCT CTTCCTCCAG CAGCTGATCG ATCTCAATAC GCGGGAACTG CCCGAGAATG GCGGCCGCGT GCCGGTGCTC ATTTTGCTCG ACGAGTTCGC CCGCCTCGGC AAGGCGCCGG TCATCGCCTC GGCCTTTTCT TATGTCGCAG GCTACGGGCT TCGCCTGTTG CCAGTCATAC AGAGCCGTTC CCAGCCCCGC GGGATCTATG GCGTGGACGT CACCGACGAG ATCATCGCCA ATTGCGGCCT GGAGATCGTA TTTACACCCA AGGAGCTGAA GGTCGCCAGC GAACTCTCCG AGCGGCTTGG CTATTTCACG ATGAACGTCA AATCGAAGAG CCGCACGATT CATGGCCTGC TCGCCAATCG CAGCATCTCG GAATCAGACC AGCGCCGTGC GCTGATGATG CCGCAGGAAC TGATGCAGAT GCCCAAGGGC GAGCTTCTGC TCATGCGCGG AGGCATTCCA CCCGTCAGGG GCCGCAAGAT CGAGTATTTC CGCTCGAAAC GCTTCACGAG CCGGATCAGT GACCCACCCA AGGTCGCGCC CCGTCCGATC GCGATCAACG CCATGTCGTC GGCCACCAAA TTGGCAGGCG AGGCGAGCAG CAGTGATCCT TTGGCGCAGG CCCTTAGCGC GAAGAAGGCC GCCTTGTTGA GCGACGATCA GGCGACCGCG CCGACAGAAC GGGCGGAACC TGTCATGCGC GCGCTCACCG GTAACGAACT CTCGGGCTTT GCCGAAATCA CCGATGACAT GTTGGTGCTG GGCGACATGG TGGATCTACC ACCGCCCGGT GACGAACAGG CAGCTATCGC CTTTGTCACG GCGATGACGG CCCGGGCCGT TCTCGAGCCC GTGGGTGGAG GCGCCCAATC TCCAGCATTT GTGACCGAAA GGCATGACCA TGACAGAGAA TGA
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Protein sequence | MTRLSDARPL TRVVIVAGVL AATFLACALC AVLVALVGLN QIGPRMQISA IPAWLWYYRG DPLLHLWLKR GALISGAIAF VILLIILKRG RTLHGEARFA RESEIRREHL RSNSGIIVGQ KGGRYLVFGG TEHVLLEAPT RAGKGVGVVI PNLLSWADSV VVLDVKRENW DITAGFRARH GQAVYLFDPL DPEGRSARYN PLSFIDRLDD TDVINELQKI GGMLFPAPEK ADPFWAEAAR AAFVGVGALV AANPALPFTI GEIYRRLTAG DPKVELPKVV EEAQQRGQRL SQACVSALSD FTSASDNTFS GIKQTITSKL NLWLNPYVDA ATSETDFDLR QVRRERISIY LGVSPDNIDR IAPVYNLFLQ QLIDLNTREL PENGGRVPVL ILLDEFARLG KAPVIASAFS YVAGYGLRLL PVIQSRSQPR GIYGVDVTDE IIANCGLEIV FTPKELKVAS ELSERLGYFT MNVKSKSRTI HGLLANRSIS ESDQRRALMM PQELMQMPKG ELLLMRGGIP PVRGRKIEYF RSKRFTSRIS DPPKVAPRPI AINAMSSATK LAGEASSSDP LAQALSAKKA ALLSDDQATA PTERAEPVMR ALTGNELSGF AEITDDMLVL GDMVDLPPPG DEQAAIAFVT AMTARAVLEP VGGGAQSPAF VTERHDHDRE
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