Gene Swit_5000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_5000 
Symbol 
ID5195893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009508 
Strand
Start bp116346 
End bp118358 
Gene Length2013 bp 
Protein Length670 aa 
Translation table11 
GC content62% 
IMG OID640579435 
ProductTRAG family protein 
Protein accessionYP_001260383 
Protein GI148550953 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones51 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCCGCC TGTCGGACGC ACGACCGCTC ACTAGGGTCG TAATCGTCGC GGGGGTTCTC 
GCGGCAACCT TTTTGGCATG CGCCCTGTGC GCGGTGCTGG TCGCACTGGT CGGCCTGAAC
CAGATCGGCC CGCGAATGCA GATCTCGGCG ATACCCGCAT GGCTCTGGTA TTATCGCGGC
GATCCGCTGC TTCATCTGTG GCTGAAGCGA GGCGCGCTGA TCAGCGGCGC GATCGCTTTC
GTCATCCTGC TCATCATCCT GAAGCGAGGG CGCACGCTCC ACGGCGAAGC CAGGTTCGCG
CGTGAAAGTG AAATCCGCCG CGAACATCTG CGCAGCAACA GCGGGATCAT CGTCGGACAG
AAAGGCGGCC GCTATCTCGT TTTCGGCGGC ACCGAACATG TCTTGCTCGA GGCGCCGACG
CGCGCCGGCA AGGGCGTCGG CGTTGTGATC CCCAATCTCC TGAGCTGGGC AGACTCGGTG
GTGGTGCTCG ACGTGAAGCG CGAGAATTGG GACATCACCG CTGGTTTTCG CGCGCGGCAT
GGCCAGGCGG TCTATCTGTT CGATCCGCTG GATCCTGAAG GGCGAAGCGC CCGCTACAAT
CCCTTGAGTT TCATCGACCG GCTCGACGAC ACCGATGTGA TCAATGAACT CCAGAAGATC
GGCGGCATGC TGTTTCCGGC CCCGGAAAAG GCTGATCCGT TCTGGGCGGA AGCGGCGCGC
GCCGCCTTTG TCGGCGTCGG CGCCCTTGTC GCAGCCAACC CCGCCCTCCC CTTCACGATC
GGCGAAATCT ATCGGCGGCT GACAGCGGGC GATCCGAAGG TCGAACTCCC CAAGGTCGTC
GAGGAGGCGC AGCAGCGCGG GCAGCGGCTG AGCCAGGCGT GTGTGTCGGC GCTGAGCGAC
TTCACCTCCG CGTCCGACAA CACCTTCTCC GGCATCAAAC AGACGATCAC CTCGAAGCTC
AATCTGTGGC TCAACCCCTA TGTCGATGCT GCGACATCGG AGACAGATTT TGATCTGCGG
CAGGTCCGGC GCGAGCGGAT ATCGATCTAT CTTGGGGTGT CGCCCGACAA TATCGACCGG
ATCGCGCCCG TCTATAACCT CTTCCTCCAG CAGCTGATCG ATCTCAATAC GCGGGAACTG
CCCGAGAATG GCGGCCGCGT GCCGGTGCTC ATTTTGCTCG ACGAGTTCGC CCGCCTCGGC
AAGGCGCCGG TCATCGCCTC GGCCTTTTCT TATGTCGCAG GCTACGGGCT TCGCCTGTTG
CCAGTCATAC AGAGCCGTTC CCAGCCCCGC GGGATCTATG GCGTGGACGT CACCGACGAG
ATCATCGCCA ATTGCGGCCT GGAGATCGTA TTTACACCCA AGGAGCTGAA GGTCGCCAGC
GAACTCTCCG AGCGGCTTGG CTATTTCACG ATGAACGTCA AATCGAAGAG CCGCACGATT
CATGGCCTGC TCGCCAATCG CAGCATCTCG GAATCAGACC AGCGCCGTGC GCTGATGATG
CCGCAGGAAC TGATGCAGAT GCCCAAGGGC GAGCTTCTGC TCATGCGCGG AGGCATTCCA
CCCGTCAGGG GCCGCAAGAT CGAGTATTTC CGCTCGAAAC GCTTCACGAG CCGGATCAGT
GACCCACCCA AGGTCGCGCC CCGTCCGATC GCGATCAACG CCATGTCGTC GGCCACCAAA
TTGGCAGGCG AGGCGAGCAG CAGTGATCCT TTGGCGCAGG CCCTTAGCGC GAAGAAGGCC
GCCTTGTTGA GCGACGATCA GGCGACCGCG CCGACAGAAC GGGCGGAACC TGTCATGCGC
GCGCTCACCG GTAACGAACT CTCGGGCTTT GCCGAAATCA CCGATGACAT GTTGGTGCTG
GGCGACATGG TGGATCTACC ACCGCCCGGT GACGAACAGG CAGCTATCGC CTTTGTCACG
GCGATGACGG CCCGGGCCGT TCTCGAGCCC GTGGGTGGAG GCGCCCAATC TCCAGCATTT
GTGACCGAAA GGCATGACCA TGACAGAGAA TGA
 
Protein sequence
MTRLSDARPL TRVVIVAGVL AATFLACALC AVLVALVGLN QIGPRMQISA IPAWLWYYRG 
DPLLHLWLKR GALISGAIAF VILLIILKRG RTLHGEARFA RESEIRREHL RSNSGIIVGQ
KGGRYLVFGG TEHVLLEAPT RAGKGVGVVI PNLLSWADSV VVLDVKRENW DITAGFRARH
GQAVYLFDPL DPEGRSARYN PLSFIDRLDD TDVINELQKI GGMLFPAPEK ADPFWAEAAR
AAFVGVGALV AANPALPFTI GEIYRRLTAG DPKVELPKVV EEAQQRGQRL SQACVSALSD
FTSASDNTFS GIKQTITSKL NLWLNPYVDA ATSETDFDLR QVRRERISIY LGVSPDNIDR
IAPVYNLFLQ QLIDLNTREL PENGGRVPVL ILLDEFARLG KAPVIASAFS YVAGYGLRLL
PVIQSRSQPR GIYGVDVTDE IIANCGLEIV FTPKELKVAS ELSERLGYFT MNVKSKSRTI
HGLLANRSIS ESDQRRALMM PQELMQMPKG ELLLMRGGIP PVRGRKIEYF RSKRFTSRIS
DPPKVAPRPI AINAMSSATK LAGEASSSDP LAQALSAKKA ALLSDDQATA PTERAEPVMR
ALTGNELSGF AEITDDMLVL GDMVDLPPPG DEQAAIAFVT AMTARAVLEP VGGGAQSPAF
VTERHDHDRE