Gene Swit_4900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4900 
Symbol 
ID5195878 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009508 
Strand
Start bp14785 
End bp15597 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content63% 
IMG OID640579341 
ProductIS4 family transposase 
Protein accessionYP_001260289 
Protein GI148550859 
COG category[L] Replication, recombination and repair 
COG ID[COG3293] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones57 
Plasmid unclonability p-value0.413324 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.183223 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGACCC CGGCCACCCG CGCGCAGCAT ACGCGCGTGG CGAAGCGATA CCAGACGGAT 
TTGAGTGATG CGGAGTGGCG ATTGATCGCC GCATTTCTGC CCGAGGCACG TTCGACCGGG
CGACGGCGGG AATGGCCGAT GCGCGAGATC GTGAACGCCA TATTCTATGT GCTGCGCGGC
GGGATCGCCT GGCGACTGTT GCCGAAAGAC TTTCCTCCGT GGCAGACAGT CTACCGCTGG
TTTGCCCTGT TGCGCGACGA AGCAGTGTTC GAGCGAATGA ACCATGCTCT GGTGATGACC
GACCGCGAAC GGACGGGGCG CGAGGCCAGC CCGAGCGCGG CCATTATCGA CAGTCAGAGC
GTCAAGACCA CGGAAAGCGG CGGCCCACGG GGCTATGACG CCGGCAAGAA GATCAAGGGG
CGCAAGCGAC ATGCCCTGGT CGATACCGAT GGCAGGGCGC TGCTGGTCGA ACCTCACACC
GCCGATGTCC AGGATCGTGA TGGCGGTGGT GCAGTGCTGC AAATATCACG CGGCCTGTTC
CCGTTCATCG AGAAGGTCTG GGCCGATGGC GGCTACAACC ATGAGCGCGT CACGCAGGCT
ACCAGCATCA CCGTTGAAAT CGTCAGCAAA ATCACCGGGC AGACCGGCTT CGTCGTCCTG
CCAAGGCGCT GGGTCGTTGA ACGCTTCTTC GCATGGATCA ACCGAAATCG CCGTCTCGCC
AAGGACGTCG AGGCAACCCT CAAGTCCGCC GCAGCATTCC TCTACGCCGC CGCTGCCATG
CTCATGATCC GCAGACTGGC GCGATCAGCG TGA
 
Protein sequence
MWTPATRAQH TRVAKRYQTD LSDAEWRLIA AFLPEARSTG RRREWPMREI VNAIFYVLRG 
GIAWRLLPKD FPPWQTVYRW FALLRDEAVF ERMNHALVMT DRERTGREAS PSAAIIDSQS
VKTTESGGPR GYDAGKKIKG RKRHALVDTD GRALLVEPHT ADVQDRDGGG AVLQISRGLF
PFIEKVWADG GYNHERVTQA TSITVEIVSK ITGQTGFVVL PRRWVVERFF AWINRNRRLA
KDVEATLKSA AAFLYAAAAM LMIRRLARSA