Gene Swit_5386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_5386 
Symbol 
ID5195721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009507 
Strand+ 
Start bp293344 
End bp293967 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content65% 
IMG OID640579313 
Producthypothetical protein 
Protein accessionYP_001260261 
Protein GI148550822 
COG category[S] Function unknown 
COG ID[COG3247] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGACA CCTCGCTCTG GCGCGGCGTC CCGCTGGTGG CGCAAAACTG GAAATGGATG 
ATGGTTCGCG GTGTCCTGGG TCTGGCGCTG GGCATAGCGG CGCTGCTGTT CCCTGCGGGC 
GCACTCTTTG CCTTCACGAT GCTGTTTGCC GCTTTTGCTG GCGTCGACGG CATCGCTTCG 
CTGATTGCCG GGATACAGGG CGCCGCGCAC AAGGAGGACC GGTGGATCGC CTTGGTCCTG 
CGCGGCGTGC TCGGACTTGT AGCAGCCGGC CTCTTCGTAG CCTTGCCGCT GGAATTCACC 
GTCAGCTACG CGTTGGCGAC ACTGGTTCTG GTTGCGGTCT GGGCGATAGC GGTCGGCTTG 
CTCGAGATCG TCGCGGCGGT TCGACTGCGC AAGGAAGTCC GAGGGGAAGT GCTCCTTGCC 
CTTTCCGGCG CGATCACCGT CGGGCTAGGC GTCGCGATAC TGGTCCTGCT CTATCTGCAG 
CCGATCGCCT CGATCCTGTC CGTCGCATGG CTTATCGGCG CCTGGGCCTT GCTCGGGGGC 
GGGCTATTGA TCAGCCTTGC CTGGCGGCTG CGGGCTTCGG GACAGGGCAA CAAGGGACCT 
GATCCAGAGG CGGTGGCGGC GTAA
 
Protein sequence
MHDTSLWRGV PLVAQNWKWM MVRGVLGLAL GIAALLFPAG ALFAFTMLFA AFAGVDGIAS 
LIAGIQGAAH KEDRWIALVL RGVLGLVAAG LFVALPLEFT VSYALATLVL VAVWAIAVGL 
LEIVAAVRLR KEVRGEVLLA LSGAITVGLG VAILVLLYLQ PIASILSVAW LIGAWALLGG 
GLLISLAWRL RASGQGNKGP DPEAVAA