| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5196 |
|---|
| Symbol | |
|---|
| ID | 5195713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | - |
|---|
| Start bp | 84783 |
|---|
| End bp | 86432 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640579126 |
|---|
| Product | ParB family protein |
|---|
| Protein accession | YP_001260074 |
|---|
| Protein GI | 148550635 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1475] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.791015 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCACTC CAGAACCGAG CTGCGCCACG CTGCCGCTCT CGCGCATCGT CAAGGGCGAC
AATCCGCGTC GCTATTTCGA CCGGAAAAAG CACGACGATC TCGTCGCTTC GATCCGCATT
CGTGGCATCC TGCAGCCGAT CCTGGTTCGT CCGGCACCCA GCTCGGACGA TAGCTACGCC
ATCGTCGCCG GCGAGCGCCG GTACAGGGCG GCGCTGGAAG CGTTCGGTTC CGACGGCGAG
GTGCCCGCGA TCATCCGCGA GATGACCGAC CAGGAGGCCC TCGAGGCGGC AATCGACGAG
AACGACAATC GCGACGACGC CTCGGAGACG GAACAAGCGG ACGCGGCCGT TCGCGTGCTC
GCCGCATGCC GTAACGATCG CGCCGAGGCC GCGCGGCGTC TGGGCTGGTC GCGGGCCAAG
CTCGATCGCC GCCTGGCGCT CGCCGAACTC TCCGAGGCGG TCAAACTTGC GCTCGACGAA
CGGCGGATCA AGGTCGGCCA TGCTGAACTC CTCGCCGCGA TCCCCGCCGA CAAGCAGGAC
AAGGCCCTCG AGACCATCCT GGGCTCCGGT CTCGATGTCA GCAAGACCCG CGACCTCCTC
ATGCGCGTCA CCCAGAATCT CGGCGCGGCG TGCTTCGACA AGACCGACTG CACCACCTGT
CCGTTCAACT CGGCCGCACA GCGAACCCTG TTCGAAACCC ATGTCGATGA CGGCCATTGC
ACCAATCCGG GCTGCTTCCA GCTCAAGACC GAGGCGTGGG AAACCGCCCA ACGCGAGGAG
CAGGAGCGCG CCGCTGCCGC GGCCAAGGCA GCGGCGCCGC CGCCCGCAGA CGACATCGAG
GACGAGGAAC AGGATGACGA CGAAGACGAC GCCATCGACC AGAGCCCGCC GGAAGCGGAC
GATCAGGAAG AGGCAGGCGA CCGCGCCTCG CCTTCGGGCA CGGCAGCCAC GCCCGCATCC
ACGCCGCCCA CTGTCGTTCA ATCCAAGGGC AGTATAGTCC AGGCGCACAA GCCAACGGTC
ACCGTCAAGT CGATCGCCGG CCGCACCAGC GACCTGCGCG AGGCGACGTG GCGCACCGCG
CTCGCCCGTG CGCTCGCCGG CAATGCCGCG CACGCCCAGA CCGCGATCCT GGTCGCCGCG
ATGTCGGGCA CGCTCTCGCA GATCAAACCG GAGACGCTGA AGGCCCGCGC CGGCCTGCTG
GTGGGCGCCT CGTTCCCGGA GCTCGCCTAC AGCGCCAAGA TCGCGGAGAT CCGCGCGTTG
CCCGAGGCTC AGGCCGAGAA GGTGCTTTCC GCGATCGGCG CCGCTTATGC CAAGGATGTG
CTCACCTTCG GCCATGTCGC CGACCTCGCC CGGACCTTCG ACGTCGACCT GCGCGATGTC
TGGCAGGTCG ATAAGACATT CCTCGAGCGC TACACCAAGG ACGAACTCAG GTTCATCGCC
CAGGAGTGCG GCCTCGTCGC GCATGTAAGC GAAAAGGCGT TCGCCAAGCT GCTCAGTGCG
AAGAAGGCCG ACCTGATCGC TGGCATGCTC AACGCCACCG GCTTCGACTG GGCCGGCCGC
CTGCCGAGCT CGATGACGCT CGACGGCCAA TATGGCCCGC CCCCCGTGCC GGCCCAAGCC
GAAGAGCCGC TCTCCCGACA AGCCGCCTGA
|
|---|
| Protein sequence | MSTPEPSCAT LPLSRIVKGD NPRRYFDRKK HDDLVASIRI RGILQPILVR PAPSSDDSYA
IVAGERRYRA ALEAFGSDGE VPAIIREMTD QEALEAAIDE NDNRDDASET EQADAAVRVL
AACRNDRAEA ARRLGWSRAK LDRRLALAEL SEAVKLALDE RRIKVGHAEL LAAIPADKQD
KALETILGSG LDVSKTRDLL MRVTQNLGAA CFDKTDCTTC PFNSAAQRTL FETHVDDGHC
TNPGCFQLKT EAWETAQREE QERAAAAAKA AAPPPADDIE DEEQDDDEDD AIDQSPPEAD
DQEEAGDRAS PSGTAATPAS TPPTVVQSKG SIVQAHKPTV TVKSIAGRTS DLREATWRTA
LARALAGNAA HAQTAILVAA MSGTLSQIKP ETLKARAGLL VGASFPELAY SAKIAEIRAL
PEAQAEKVLS AIGAAYAKDV LTFGHVADLA RTFDVDLRDV WQVDKTFLER YTKDELRFIA
QECGLVAHVS EKAFAKLLSA KKADLIAGML NATGFDWAGR LPSSMTLDGQ YGPPPVPAQA
EEPLSRQAA
|
|---|
| |