| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5160 |
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| Symbol | |
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| ID | 5195600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | - |
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| Start bp | 54040 |
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| End bp | 56346 |
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| Gene Length | 2307 bp |
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| Protein Length | 768 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640579090 |
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| Product | hypothetical protein |
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| Protein accession | YP_001260038 |
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| Protein GI | 148550599 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGTG AGGACATCCG CACGGACGGG CGTCCCGTCC CGCTCACCCA TCATTCGGCG
CGCGGCCGCG TGCAGCGCAA TGCCGGCAAT TTCACCCGCG GCAGCCAGCT ACTCACCCAT
GAGATGCTGA TGTGGTTCTC GGGCGCCAAG CTGCCCTTCA TCCTCTGGTT CTTCGCCTTT
CTCGCCGCCT GGTTCATCAT CATGTCGCTC AAGCTCGACG AGCATGGTTT CCAGCTCGTC
TGCATGAAGG TCTATGCGAC CCTCTGGAAC TGGATCGACC TCAATCCGAA CAAGCGCGTC
AACGTCACGC TGCCGAACGG CGACCTCATG CGCACCGTGA TGAAAGCGGT GCCCTATATT
CCCGAGGTCA TCACAGCCTG GGCCGTCGCG ATGCGGGGCC TCATCGGCGC TTTCCTGATC
TCGGTCTTCA TCACCATTCC GGCCGCCATC TGGTTCGTCG ACATCTCGCA TCGGCGCGGC
CGTTCGATCC TTCAGGAACG GCATGAACGC GGCGCCATGC TGGTTGATCG CAGCGTGCTT
CTGGTGGAGA TCAACGAGCA TAACCGGGTG AAGTTCGAAG AGGAGGCGGC CGACCTCTTC
CCCGGCCTGT CCTCGCGGCA GGTTCTCGCG CTCCCGTTCC GAGCGCGCAA GGAAGCCGGC
ATCCATCATC CCTACACGCT CGCGGGCATC CCCTTTCCGC ACCGCACCGA ACAATCCCAT
GCGATGCTCA TCGGCACCAC CGGATCAGGC AAGACGACCG AGCTCAGAAG CCTCGTCACC
CAGATGCGCG AGCGCCAGGA CACGGCCGTC ATCTTCGATC TCACCGGCGC CTATGTCGAA
GCCTTCTACG ATCCCACACG CGACACGATC CTCAATCCCA TGGACGCGCG CTGCCCGGCC
TGGTCGATCT TCAACGATTG CCGCACCCAC AGCGAATTCA CGGCCGCCGC GGCGGCGCTA
ATCCCTTCGG ATGGCGGTTC GTCCGAACCC TTCTGGGCGC TCGCAGCGCG CACCCTCTTC
ATCGAGATGT GCATTCGCCT GATGGAGCGG GGGCAGACCA GCAATCTGGC GCTGTCCGAG
AACCTGATGA CGGCCGACCT GAAGCGCGTC CACCGCTTCC TCGCCAACAC CATCGCCGAC
CCGCTCACTG CCCCCGAAGC GGCCCGCATG GCGGAATCGA TCCGCGCCGT CTTCAACACC
AATGCGCAGG TCCTTCGCTT CCTTCCCGAC GAGGGCGAAT CCTTCTCGAT CCGCGACTGG
ATCACGCGGG ACAAGAAGCC CGGATCGATC CTGTTCGTGA CGTCGAACTA TGTCGATCTG
CCGATGAACC GGGCGCTGCT CACGCTGTGG ATGGATCTCG CGATCAACCG GCTGATGACG
CTGCCGCGCA CCCGCAGCTT GCGCACCTGG TTCATGTTCG ACGAGCTTGG CGCACTGCAT
CGCCTTCCGG CGATCGAGAA TGGTCTCCAG ACGGCGCGCG CGTTTGGCGG CGCGATGATC
CTGGGCATCC ACAGCTTCGA GAAGCTGGTC GAAGTCTATG GCGAGCAAGG GGCACGCAAT
CTCGCCTCGC TCGCCCGCTC CAAGCTCATC CTCGCGACGG CCGATCTCGA CACGGCCGAG
CAGTGCGCGC GCTACATCGG CAACCGCGAG GTTCGCCAGA TGGATGAGGC CTATAGCTAC
GGCTACAATA ACACCCGCGA CGCTTCGACC CTGACCCCGC GCAAGCAGGT CGAACCACTC
GTCATCGCCG ATGACATCAC CAACCTGCCC TCGATGCACG GCTTCGTGAA ATTCCCCGAC
GGCTTCCCCG CCGCGCGCAT CCTGCTCGAG TGGAAGGACT ATCCCCAGGT CGCCCAGGGC
TTCGTCCAAC GGCCCGATGT CGGGCCGGTA CGCTCAAGGC GCGGAGAGGA GGTGTTCGAG
GAAGACGGGG CAGGGGAGGC GGGCGGGCGC GACGGCTCGT TGCAGGTCGT GGAGGAAGTG
GCCGAGATCA CCAATCTCGC CCGCGATCTC GCCGCACGGA TCCTGTCGGC CGAGGTCGAG
GAGGAGGACG ATGCCGCCCG CCGCGCGGCG CAGCGGGCGG ACGACCGGGA CGAACAGGCG
ACGCCTGGCA CGCATAGCGC GGACAGGGCG CAGGCGGCGC GCGCCAGCGG CGAGGAACAG
CCGGTTTCCG CGCGCGACCG GGACGATCGT CGTGATGGCC ACCGGCACGG GGAGACGAGC
CCACAGGTCG AGGACCAGAC CCTGATCGAG CTGCGCCACG ACTTCTCCAC CGGCCGCGAG
GATGACGGCA TGGACATGGG CATCTGA
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| Protein sequence | MAREDIRTDG RPVPLTHHSA RGRVQRNAGN FTRGSQLLTH EMLMWFSGAK LPFILWFFAF
LAAWFIIMSL KLDEHGFQLV CMKVYATLWN WIDLNPNKRV NVTLPNGDLM RTVMKAVPYI
PEVITAWAVA MRGLIGAFLI SVFITIPAAI WFVDISHRRG RSILQERHER GAMLVDRSVL
LVEINEHNRV KFEEEAADLF PGLSSRQVLA LPFRARKEAG IHHPYTLAGI PFPHRTEQSH
AMLIGTTGSG KTTELRSLVT QMRERQDTAV IFDLTGAYVE AFYDPTRDTI LNPMDARCPA
WSIFNDCRTH SEFTAAAAAL IPSDGGSSEP FWALAARTLF IEMCIRLMER GQTSNLALSE
NLMTADLKRV HRFLANTIAD PLTAPEAARM AESIRAVFNT NAQVLRFLPD EGESFSIRDW
ITRDKKPGSI LFVTSNYVDL PMNRALLTLW MDLAINRLMT LPRTRSLRTW FMFDELGALH
RLPAIENGLQ TARAFGGAMI LGIHSFEKLV EVYGEQGARN LASLARSKLI LATADLDTAE
QCARYIGNRE VRQMDEAYSY GYNNTRDAST LTPRKQVEPL VIADDITNLP SMHGFVKFPD
GFPAARILLE WKDYPQVAQG FVQRPDVGPV RSRRGEEVFE EDGAGEAGGR DGSLQVVEEV
AEITNLARDL AARILSAEVE EEDDAARRAA QRADDRDEQA TPGTHSADRA QAARASGEEQ
PVSARDRDDR RDGHRHGETS PQVEDQTLIE LRHDFSTGRE DDGMDMGI
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