| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5133 |
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| Symbol | |
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| ID | 5195691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | - |
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| Start bp | 22271 |
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| End bp | 24025 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640579063 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001260011 |
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| Protein GI | 148550572 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.0596409 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCGC CTGGCGAACG CCGGATCGCC ACAGAAAGGG GTGAACGGCT CATTCGCTAT
GCGATGCCGG AGATGACACG GCTTTACAAA GCGTTTCACA CGCAGGATTG GGTGCTGGCC
TGCCTTGACG TCAGCGGATT TGTCATTTGC TCGATCGGCG ACGCCGAAGG GCCGTGCCGC
GAACTGGAGA GTCTTTTCCG GAACGGGGTT TCCCTCAGCG AAAGTGCGAT CGGCACCGGA
GCGCCGGGAT GCGCGCTCGT GGAACAGAAA CCCTTTATTG TCCACGCCAA CGAGCATTTC
CTTGACGAGA TTCATGGCTA TTCTTGCGCG GCCGTTCCTC TGTTCGACGT TAACGGGGAC
CTGATCGGCG TCTTGAATGC CACCTGCCGC AGCGGCAGGG ATCTGTCATC AGTTTGCGAG
GCGTTGCGGG TTGCCGCCCG AGCCATAGAA AATCATATGC TGCTTGACCT TCCGGGCGCT
CTGCACGTCT CGTTACATTA TCACCCTGAC CTGCTTCGCA CGCCCTTGGC TGCCGTTCTC
GCTTTCTCGG AACATGGGCA ATTGCTCGGT GGGAACCAGA TCGCGCGCAA GCTGCTTGGG
CATACGCGTT CGGCGACAGA GTTCGATCAC ATGTTCGACC TGCCTTTTGC GCGTGCGGTT
GACGAGCTTA GCGGCCGCAA TGCCGAACCG ATCGTGACAG ACACGCCGGC CGGCATCCGC
GTCCACCTCA GTCTCGCCCG CCATGCAGAT GACGTTATGC GGGTTGGTAA GGCGCTCTTG
CCGCCGCCCT CGGGCAAGCG TTCGTCTCAT GCCTCTTCTG ACATGTTCTG TTCCGATCCC
GCCCTGCTGG ACACCATTGG CGACGCGAAG CTGGCGTTCG CTCGTGATAT TCCTGTTCTC
CTAACCGGCG AGACGGGAAC TGGAAAGGAG GTTCTTGCGC GGGAGCTGCA CGCCTCAGGG
CCGCGGCGAA ACGGGCCGTT CGTGCCGGTA AATTGTGCGT CCATTCCCGA CGGACTGATC
GAGGCCGAAT TGTTCGGATA TGTGGAAGGG GCGTTTACCG GCGCTCGCCG GGGAGGCGCT
CCGGGTAAAT TTGAGCAGGC CCATGGTGGA ACACTCTTCC TGGATGAGAT CGGGGACATG
CCGCTCTCGC TACAGGCTCG TCTTCTGCGG GTTCTGCAGG AGCGGGCCGT CATGCCGGTG
GGCGGATCGA AGGACAGGCC GATCGATATC TCTCTGGTCT GTGCGACCCA TCGTGACCTC
AAGGCGCTCG TCGCCACGGG CGAATTTCGG GAAGACCTTT ACTACCGCAT TGATGGACTC
TGCGTCACCT TGCCCCCCTT ACGCGAGCGA GCGGATTTGT CGGAACTCAT AGGACAAATC
GTCGATCGCG AAATCGGCGA TCGTTTGACA CTTTCCCTCT CGGATGACGC ACTGGAATGT
CTGCGGTCCT TCGCATGGCC CGGGAACATC CGCCAACTGA GCCTCATTCT TCGTCGGGCC
ATCGCGCTCG CTGCCGGGAG CGCGCTGATC GCGCCAAGGC ATCTTCCAGA GGAGATGAGG
CAAACTCGTT CGAATGTGGG GCGCGAGGTG GCTTCGCTCG AACGAACGGA GCGGGATGCG
GTATTAATGG CGCTCCATCA ATGTGCGGGA AATATTGCCG CTACGGCTCG TCAATTGGGG
GTCGGCCGGC CGACGCTTTA TCGTAAGATG CGTAAGTATA ATATCGAAGT GCAGGGCGTT
AAGACCATAT TTTAA
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| Protein sequence | MAAPGERRIA TERGERLIRY AMPEMTRLYK AFHTQDWVLA CLDVSGFVIC SIGDAEGPCR
ELESLFRNGV SLSESAIGTG APGCALVEQK PFIVHANEHF LDEIHGYSCA AVPLFDVNGD
LIGVLNATCR SGRDLSSVCE ALRVAARAIE NHMLLDLPGA LHVSLHYHPD LLRTPLAAVL
AFSEHGQLLG GNQIARKLLG HTRSATEFDH MFDLPFARAV DELSGRNAEP IVTDTPAGIR
VHLSLARHAD DVMRVGKALL PPPSGKRSSH ASSDMFCSDP ALLDTIGDAK LAFARDIPVL
LTGETGTGKE VLARELHASG PRRNGPFVPV NCASIPDGLI EAELFGYVEG AFTGARRGGA
PGKFEQAHGG TLFLDEIGDM PLSLQARLLR VLQERAVMPV GGSKDRPIDI SLVCATHRDL
KALVATGEFR EDLYYRIDGL CVTLPPLRER ADLSELIGQI VDREIGDRLT LSLSDDALEC
LRSFAWPGNI RQLSLILRRA IALAAGSALI APRHLPEEMR QTRSNVGREV ASLERTERDA
VLMALHQCAG NIAATARQLG VGRPTLYRKM RKYNIEVQGV KTIF
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