Gene BOV_A0544 details

Gene Information

• Locus tag: BOV_A0544
• Symbol: mfd
• ID: 5203139
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Brucella ovis ATCC 25840
• Kingdom: Bacteria
• Replicon accession: NC_009504
• Strand: -
• Start bp: 559169
• End bp: 562567
• Gene Length: 3399 bp
• Protein Length: 1132 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640576569
• Product: transcription-repair coupling factor
• Protein accession: YP_001257567
• Protein GI: 148557853
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1197] Transcription-repair coupling factor (superfamily II helicase)
• TIGRFAM ID: [TIGR00580] transcription-repair coupling factor (mfd)

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAAGAGA TCGGGGAGCG CGGGCCGATC ATGTATATCG TGCGCGACGG GCAGCGCATT 
GCCGATCTGG AGCAGGTGTT GGGTTTCGTT TCGCCCGATC TGCCGGTGCT GCACCTGCCC 
GCCTGGGATT GCCTGCCTTA TGACCGCGTG TCGCCAGGGG CGGATGCTGC AGCGCGCAGA 
CTTGCGGCGC TCAGCGCGCT TTGCGCACTG AAGAAAGCAC CGCATCCAGC CGTCATTCTC 
ACCACGGCCA ATGCCGTGCT GCAAAAATTG CCGCCGCAGG CCGCACTTGG CGAACAGGTG 
ATCTCAGCGC GCCCCGGCAA CCAGCTCGAC ATGAACGATC TTGCCGCACG GCTGGAGCGC 
AACGGCTTTG AGCGTGTCTC TACCGTGCGC GACATCGGCG AATATGCGGT ACGCGGCGGC 
ATTCTCGATC TTTATGCGCA GGGAGCGGAA GAACCGCTGC GGCTTGATTT TTTCGGCGAT 
ACGCTGGAAA CGATCCGTGC CTTCGATCCC GCCTCCCAGC GCACCACCGG CACCCGAAAG 
GAATTCGTGC TTCAGCCGAT GAGCGAAATT ACGCTCTCGT CCGACATGAT AAGCCGGTTT 
CGCAAGAATT ATGTGGCCAT GTTCGGCGCG CCGCAGCGTG ACGATGCGCT TTATCAGGCC 
ATCAGCGAAG GCCGCCGTTT TGCTGGCATG GAACATTGGC TGCCGCTTTT CTATGACAAT 
CTGGAGACAG TTTTCGACCA TGCCGGGTCA ATGCCGGTCG TGTTCGACCA TCTGGTGCAT 
GAGGCGCTGA CCGAGCGCCA CACCATGGTT GTGGACCATT ACGAAGCGCG ACTGCGGCAG 
GCGGAGGGCA AAGAGGCGGG CAGCGATGCC GTGCCTTACA AGCCGGTAAA GCCGGAAATG 
CTCTATCTTA CGCCGGGCCA GGTTGAAGAA GCCGCCGAGG CCGCTGGCCT GCGTATTGAC 
CTTACGCCAT TCGGCGCGCC GGAGGTTTCC GGCCGGACCA TTATTCATGC CGATGTGCAC 
AAGGGCCGCA GCTTTGCCGA GGAGCGCGCC GCAACCGACG TGAACCTGTT TGAAGCCGTG 
GTGAAACATA TTGCAGACCT GCGCGCCTCC GGCAAAAAGG TTCTGGTTGC CGCCTGGACC 
GAAGGTTCGC TCGACCGGCT CTGTCAGGTT CTGGACGAAC ACGGGCTTGA AAAAATAGAG 
ACCGTCGATA GGCTTTCCAC CGTCAAGGCC CTGTCGCGCG ACAAGGTGAC GGCGGCGGTG 
CTGGCGGTCG AAAGCGGCTT CGATACGGGC GATCTGGTGG TCGTGGCGGA GCAGGATATT 
CTGGGCGACA GGCTCATCCG CCGCTCCAGG CGCCGCAAGC GCGATCAGGA TTTCATCTCG 
GAAGTCGCCT CGCTGACGGC TGGCGATATC GTCGTCCATG TCGATCACGG CATTGGGCGC 
TTTATCGGCC TCAAGACGAT TACTGCGGCA GGCGCCCCGC ATGACTGCCT TGAAATCCAT 
TATGCGGGCG ATGACCGCCT GTTTCTGCCG GTTGAGAATA TCGAGCTTCT GTCGCGCTAT 
GGCTCGGAAG GGTCCGATGC GGTTCTCGAC AAGCTGGGCG GTGGCGCATG GCAGGCGCGC 
AAGGCAAAAC TCAAGAAACG GCTTCTGGAA ATTGCCGGCC ATCTGATCCA GATTGCCGCC 
GAACGCCAGA TGCGCGGTGC GCCTGTGATG ACGCCGCCGG ACGGTCTTTA TGCGGAATTT 
GCCGCGCGCT TTCCCGATGA TGAGACTGAC GACCAGTTGA CGGCAATCGA GGCCGTGGCG 
GATGATCTTG CGCAAGGCAA GCCGATGGAT CGCCTCATCT GCGGCGATGT CGGGTTCGGC 
AAGACGGAAG TGGCGCTGCG CGCCGCCTTC ATCGCCGCGA TGAGCGGCGT TCAGGTGGCA 
GTGGTCGTGC CGACCACGCT TCTTTCGCGC CAGCATTTCA AGACCTTCTC CAACCGCTTT 
CACGGCCTGC CGATCAATGT GGCCCACGCC TCACGCCTCG TCGGCGCGAA GGAGCTGGCC 
GCCACCAAAA AGGGGCTGGA AGAGGGAACG GTCGATATTG TCGTCGGCAC ACACGCGCTT 
TTGGGCAGCT CCATCAAGTT CAAGAATCTC GGCCTTCTCA TTATCGATGA GGAGCAGCAT 
TTCGGTGTGA AGCACAAGGA ACGGCTGAAG GAACTGAAAT CCGACGTCCA TGTGCTGACC 
CTTTCGGCCA CGCCGATCCC GCGCACCCTG CAACTTGCGC TGACCGGCGT GCGTGAACTT 
TCGCTCATCA CCACGCCGCC GGTGGACCGC ATGGCGGTGC GCACCTTCGT CTCGCCATTC 
GATCCGCTCG TGATCCGCGA AACCCTTTTG CGTGAACGCT ATCGCGGCGG CCAGAGCTTC 
TATGTCGTCC CACGCATAGC CGACCTCACG GATATTGAAG AATTCCTGAA GGAGCATGTG 
CCGGAACTGA AAGTGGCCGT GGCCCATGGC CAGATGGCGC CGGGTGTGCT GGATGACATC 
ATGAATGCCT TCTATGACGG GCAGTATGAT GTGCTTCTTT CCACAACCAT CGTGGAATCG 
GGCCTCGATA TTCCAACCGC CAACACCATG ATCGTGCATC GTGCCGATAT GTTCGGGCTG 
GCGCAACTCT ATCAGTTGCG CGGCCGCGTG GGCCGCTCCA AGCAGCGCGC TTTCGCGCTG 
TTCACGCTCC CGGCGGGCAA GATGCTGACG CAGATGGCCG AACGCCGTCT GAAAGTGCTG 
CAATCGCTCG ACACGCTTGG CGCGGGCTTC CAGCTTGCAA GCCACGACAT GGATATTCGC 
GGCGCAGGCA ATCTGCTGGG CGAGGAACAG TCGGGCCACA TCAAGGAAGT GGGCTTCGAG 
CTTTACCAGC AAATGCTTGA AGAAGCGGTT GCGACGCTGA AGGGCTCCGG CGAAGTGGAA 
GACAGCCAGT GGTCGCCGCA GATCGCCATT GGTACGGCGG TCATGATCCC GGAAGCCTAT 
GTGCCCGACC TGCAATTGCG CCTTGGCCTT TATCGCCGTC TGGCCGATCT GGAAGAGCCG 
CAGGATATCG ATGCCTTTGG TGCGGAACTC ATCGACCATT TCGGCCCGAT GCCCGACGAA 
GTGCAGCATC TTCTCAAGAT CGTCTATATC AAGGCGCTCT GCCGCCGCGC CAATGTTGAG 
AAACTCGATG CCGAGCCGAA GGGCGTGGTT ATCCAGTTCC GCCACGCGAC CTTCAACAAT 
CCGGTCGGTC TGGTAAAAAT GATCGGCGAG CAGGGGTCCA TGGCGAAGAT CAGGCCGGAC 
CAGAGCATCG TCTTCATCCG CGATTGGCCG ACACCGGAAA AGCGCCTCAA CGGCTCCGCC 
GTCATCATGA CACAGCTTGC AAAGATTGCG GCGGCCTGA 

 

Protein sequence

MEEIGERGPI MYIVRDGQRI ADLEQVLGFV SPDLPVLHLP AWDCLPYDRV SPGADAAARR 
LAALSALCAL KKAPHPAVIL TTANAVLQKL PPQAALGEQV ISARPGNQLD MNDLAARLER 
NGFERVSTVR DIGEYAVRGG ILDLYAQGAE EPLRLDFFGD TLETIRAFDP ASQRTTGTRK 
EFVLQPMSEI TLSSDMISRF RKNYVAMFGA PQRDDALYQA ISEGRRFAGM EHWLPLFYDN 
LETVFDHAGS MPVVFDHLVH EALTERHTMV VDHYEARLRQ AEGKEAGSDA VPYKPVKPEM 
LYLTPGQVEE AAEAAGLRID LTPFGAPEVS GRTIIHADVH KGRSFAEERA ATDVNLFEAV 
VKHIADLRAS GKKVLVAAWT EGSLDRLCQV LDEHGLEKIE TVDRLSTVKA LSRDKVTAAV 
LAVESGFDTG DLVVVAEQDI LGDRLIRRSR RRKRDQDFIS EVASLTAGDI VVHVDHGIGR 
FIGLKTITAA GAPHDCLEIH YAGDDRLFLP VENIELLSRY GSEGSDAVLD KLGGGAWQAR 
KAKLKKRLLE IAGHLIQIAA ERQMRGAPVM TPPDGLYAEF AARFPDDETD DQLTAIEAVA 
DDLAQGKPMD RLICGDVGFG KTEVALRAAF IAAMSGVQVA VVVPTTLLSR QHFKTFSNRF 
HGLPINVAHA SRLVGAKELA ATKKGLEEGT VDIVVGTHAL LGSSIKFKNL GLLIIDEEQH 
FGVKHKERLK ELKSDVHVLT LSATPIPRTL QLALTGVREL SLITTPPVDR MAVRTFVSPF 
DPLVIRETLL RERYRGGQSF YVVPRIADLT DIEEFLKEHV PELKVAVAHG QMAPGVLDDI 
MNAFYDGQYD VLLSTTIVES GLDIPTANTM IVHRADMFGL AQLYQLRGRV GRSKQRAFAL 
FTLPAGKMLT QMAERRLKVL QSLDTLGAGF QLASHDMDIR GAGNLLGEEQ SGHIKEVGFE 
LYQQMLEEAV ATLKGSGEVE DSQWSPQIAI GTAVMIPEAY VPDLQLRLGL YRRLADLEEP 
QDIDAFGAEL IDHFGPMPDE VQHLLKIVYI KALCRRANVE KLDAEPKGVV IQFRHATFNN 
PVGLVKMIGE QGSMAKIRPD QSIVFIRDWP TPEKRLNGSA VIMTQLAKIA AA