Gene Tpet_1788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1788 
Symbol 
ID5171506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand- 
Start bp1798642 
End bp1799268 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content47% 
IMG OID640564309 
ProductLemA family protein 
Protein accessionYP_001245364 
Protein GI148270904 
COG category[S] Function unknown 
COG ID[COG1704] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.00000175947 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAATT CCAACAACAT AAAATTCCAT GATAACATGT TAAAAGTGGA AGGAGGGATT 
TCTGTGAAAA AAGGCCTCAT CGTTCTGATA ATCGTTCTGA TCGTAGTGGT CATCATCATC 
GGCACCACGA TAGGATACTA CAACTACCTT GTTTCGCTGG AACAGGAAGT GAAGGAAAAG 
TACAGCCAGA TTCAGAACCA GCTTCAAAGG AGAGCAGATC TCATACCCAA CCTCGTGGAA 
ACGGTGAAGG GATATGCTGC ACACGAGAAA GAGATTCTCG AAGAGATAGC GAATGCAAGA 
GCGAAACTGA TAGGTGCAAG AACACCACAG GAGAGCGCCC AGGCTGATGC AGAGCTTTCT 
TCAGCCCTCT CAAGACTTCT TGCCATAGCG GAAAACTATC CCAATCTCAA GGCTGACGCG 
AACTTTCGCC AGCTCATGGA TGAACTCGCC GGAACGGAAA ACAGGATCGC AGTCGCTCGA 
AGAGACTACA ACGAAGCAGT GAAAAGGTAC AACACCGCTA TAAAGAGGTT CCCCGGTGTG 
ATCTTTGCAA GGATGTTCGG ATTCGAAGAG AAACAGTACT TTGAAGCAAA AGCCGGAGCA 
GAGCAGGTGC CAGAGGTGAA GTTCTGA
 
Protein sequence
MRNSNNIKFH DNMLKVEGGI SVKKGLIVLI IVLIVVVIII GTTIGYYNYL VSLEQEVKEK 
YSQIQNQLQR RADLIPNLVE TVKGYAAHEK EILEEIANAR AKLIGARTPQ ESAQADAELS 
SALSRLLAIA ENYPNLKADA NFRQLMDELA GTENRIAVAR RDYNEAVKRY NTAIKRFPGV 
IFARMFGFEE KQYFEAKAGA EQVPEVKF