| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1677 |
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| Symbol | |
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| ID | 5171299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1672949 |
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| End bp | 1674916 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640564203 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001245258 |
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| Protein GI | 148270798 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00224475 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAGGA GAGTTCTGTG GGGCCTTCTT GTAGTAATCT TCGCAGCCCA GATCCTTGCT
ATTGGACTCA ACAAAATCGT TCCCGGTGAG TATTACAATC TCACCGACTA CGAACGTCTG
ACAGGCAAGA AGATCACGAA ATTCAACGAA GCACCGATGT TGAAAGAGAT GGTTGAGAAA
GGACTGCTTC CACCTGTGGA GGAAAGGCTT CCGAAGAATC CGGTTGTGGT GACACCTTAT
GAGGAGATAG GTCAATACGG TGGTACCTGG AGAAGAGTAT GGTTCGGCCT TCCGGATCAG
CCCAATGTCG ATAAGATCGC TGTCGAGAAA CTCGTGATGT TCGATAAGAC CGGTGGGGTA
ATACTTCCGA ATATCCTCGA AGAGTGGCAG GTTAGCAGTG ATGGTAAAAC GTTTGTCTTC
AAGATAAGAG AAGGGCTGAA GTGGTCTGAT GGTGTGCCTG TCACCACAGA GGACGTGAGA
TTTTGGTATG AAGACATTTT ACTGGATGAA AATCTGACCC CTACGATTCC TTCCTGGCTG
ATCGCTGGAG GTAAACCCTT AAAAGTAGAA ATCGTCGATA AGTGTACATT CAAAGTAAAT
TTCGAAGTCC CCTATCCTCT GTTTCTCTAT CAGCTAGCAT ACCGGGGACA GGGCGGTTAC
GTTTTCGTTG TCCCATCGCA CTATCTGAAA AACTTCCATC CAAAGTATGT CCCGCTTGAA
AAACTGACAC AAATGGCGAA GGAAGAAGGA TACGATTACT GGTGGCAACT TTTCGCTGCG
AAAGGTACCA ATACCAATGC GTGGATTACG AATCCTGAGC TTCCCGTACT CTATCCATGG
AAATTGAAGA AATTGACTGA TTCACAACTC GTCATCGAAA GGAACCCATA CTATTTCAAG
GTGGATCCTG AAGGGAATCA GCTTCCATAC ATAGATGAAA TAGTGTTCTA CAGGATTCAA
GACAAACAGA TGGCGCTCAT GAAAGCTATG GCTGGAGAAA TAGATATGCA AACCAGGCAC
TTTGGAACGG AACAGTTCAC TATATTACTT GAGAACAGGG AAAAAGGTGG CTATAGAGTT
TTGAGATGGG TTTGGGGTGT TGGCAGCATA GTAACGTTCT ATGTGAATCA AAATGTGAAA
GATCCCGTTC TTAGAGAACT CTTCCAGAAT CCAAAGTTCA GATACGCCCT TTCACTGGCG
ATAAACCGAG AAGAAATAGC TACCCTGGTC TTCCACAACC TTGGTGAGCC ACGTCAAGCA
TCACTGATCA CAGGTGTTGC TTTCTACGAT CCTGAATGGG AGAAAGCATA TGCGGAATAT
AACCCTGAGA AGGCGAACGC TCTCTTGGAT GAAATAGGCC TGACAAAGCG AGATGCCGAG
GGTTATAGAA TAAGATCGGA TGGCAAAAGG TTGGAAATAA TAATAGAGTA CTCCGTAACA
GACGCTGTTG TTGACGTACT GGAGATGGTA AAACAGTACT GGGAAAATCT GGGTATCAAG
GTGCTCCTGA AACCTGAGGA ACGATCGCTC TACATGACAA GGTGTGAAGC AGGAGAGCCT
GAAATAGGTG CGTGGTCATT CGACAGATGT GCAGCCGTAT TGAGCGATCC TGGAAGGTTA
CTGGGAACAG TGTGGGATGG CCCATGGGCA CCTCTTTATG CAAGGTGGTA CATTTCCGGT
GGAAAAGCTG GCGAGGAACC ACCAGAAGGC TCAGACATTA GAAGAATCTA CGAGCTTTGG
GACAAAGTAA AAGTAACCGT CGATGAAGAA GAAAGAGACA GACTTTTCAA GGAGCTCATC
AACATTCATA AGAAAAATAT CTTCTTCATA GGAACGGTGG GAGAAGTCCA GATACCTGTC
ATCGTGAAGG ACAATTTCAG AAATGTCCCT GATGGATTAA TCTTTGATCA TCCTCTCTTC
AGTCCAAAGA ATGCCCGACC GGAACAATTC TTCTTTGAAC TGAAATAA
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| Protein sequence | MFRRVLWGLL VVIFAAQILA IGLNKIVPGE YYNLTDYERL TGKKITKFNE APMLKEMVEK
GLLPPVEERL PKNPVVVTPY EEIGQYGGTW RRVWFGLPDQ PNVDKIAVEK LVMFDKTGGV
ILPNILEEWQ VSSDGKTFVF KIREGLKWSD GVPVTTEDVR FWYEDILLDE NLTPTIPSWL
IAGGKPLKVE IVDKCTFKVN FEVPYPLFLY QLAYRGQGGY VFVVPSHYLK NFHPKYVPLE
KLTQMAKEEG YDYWWQLFAA KGTNTNAWIT NPELPVLYPW KLKKLTDSQL VIERNPYYFK
VDPEGNQLPY IDEIVFYRIQ DKQMALMKAM AGEIDMQTRH FGTEQFTILL ENREKGGYRV
LRWVWGVGSI VTFYVNQNVK DPVLRELFQN PKFRYALSLA INREEIATLV FHNLGEPRQA
SLITGVAFYD PEWEKAYAEY NPEKANALLD EIGLTKRDAE GYRIRSDGKR LEIIIEYSVT
DAVVDVLEMV KQYWENLGIK VLLKPEERSL YMTRCEAGEP EIGAWSFDRC AAVLSDPGRL
LGTVWDGPWA PLYARWYISG GKAGEEPPEG SDIRRIYELW DKVKVTVDEE ERDRLFKELI
NIHKKNIFFI GTVGEVQIPV IVKDNFRNVP DGLIFDHPLF SPKNARPEQF FFELK
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