| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1559 |
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| Symbol | |
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| ID | 5170333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1554653 |
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| End bp | 1557907 |
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| Gene Length | 3255 bp |
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| Protein Length | 1084 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640564085 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001245142 |
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| Protein GI | 148270682 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000116157 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTACG AATGGGAAAA CCCACAGCTT GTGGGTGAAG GAACGGAGAA GCCACACGCT
TCTTTCATAC CCTATCTGGA CCCGTTCAGC GGGGAATGGG AGTACCCTGA GGAATTCATC
TCTTTGAACG GGAACTGGGG GTTTCTCTTC GCGAAAAATC CCTTCGAGGT GCCGGAGGAT
TTCTTTTCAG AGAACTTCGA CGACTCGAAC TGGGATGAGA TAGAAGTTCC AAGCAACTGG
GAGATGAAAG GATATGGGAA GCCCATCTAC ACGAACGTGG TTTATCCATT TGAACCGAAC
CCTCCTTTTG TTCCAAAAGA CGACAATCCG ACCGGGGTGT ACAGAAGGTG GATCGAGATA
CCTGAGGATT GGTTCAAAAG GGAGATCTTT CTGCATTTTG AAGGTGTTCG ATCCTTCTTC
TATCTGTGGG TGAACGGGAA GAAGATCGGT TTCAGCAAAG ACAGCTGCAC ACCCGCTGAA
TTCAGACTCA CCGATGTTCT AAGGCCAGGG AAGAATCTGA TCACCGTTGA GGTTCTGAAG
TGGAGCGATG GAAGCTATCT CGAAGATCAG GACATGTGGT GGTTTGCGGG GATATACAGG
GACGTTTATC TGTACTCGCT GCCGAAATTT CACATCAGGG ACGTGTTCGT GAGAACGGAT
CTGGATGAAA ATTACAGAGA CGGAAAGATC TTTCTGGACG TAGAGATGAG AAATCTCGGT
GAGGAAGAAG AAAAAGACCT TGAAGTAACA CTCATCACAC CGGATGGAGA CGAAAAAACA
CTCGTGAAAG AGACAGTAAA GCCGGAGGAC AGAGTCCTTT CCTTTGCCTT TGACGTGAAA
GATCCGAGGA AGTGGTCCGC GGAGACACCA CATCTGTACG TTTTGAAACT GAAACTGGGA
GAAGACGAAA AGAAAGTCAA CTTCGGATTC AGGAAGATAG AGATAAAAGA CGGAATGCTT
CTTTTCAACG GGAAACCTCT CTACATAAAG GGAGTGAACA GACACGAGTT CGATCCTGAC
AGGGGTCATG CGGTGACGGT GGAGAGGATG ATTCAGGACA TAAAACTCAT GAAGCAGCAC
AACATAAACA CAGTTCGCAC ATCGCACTAT CCGAACCAGA CGAAGTGGTA CGATCTGTGT
GACTATTTTG GACTCTACGT GATAGACGAG GCAAACATCG AATCCCACGG TATAGGCTGG
GATCCTGAAG TGACACTTGC GAACAGACCG GAATGGGAGA AGGCACATCT CGACAGAATC
CAGAGGATGG TCGAGCGTGA CAAGAATCAT CCGTGTGTTA TCTTCTGGTC TCTTGGAAAC
GAAGCGGGAG ACGGAGTGAA TTTCGAAAAA GCCGCTCTCT GGATAAAGGA AAGAGACAAC
ACGCGGCTTA TCCATTACGA GGGAACAACA AGGAGGGGAG AATCGTACTA CGTGGATGTT
TTCTCTCTCA TGTACCCGAA GATAGACGTT CTTCTTGAGT ACGCCTCCAG AAAGAGGGAA
AAGCCTTTCA TCATGTGTGA GTATGCCCAC GCGATGGGAA ACAGTGTGGG AAATCTGAAG
GACTACTGGG ATGTGATAGA AAGGTATCCG TATCTTCACG GAGGGTGCAT CTGGGACTGG
GTGGACCAGG GAATCAGGAA GAAGGATGAA AACGGAAAGG AATTCTGGGC GTACGGTGGA
GATTTCGGCG ATGAACCAAA CAACAAGAAT TTCTGCTGCA ACGGAGTGGT CCTTCCCGAC
AGAACACCCG AGCCAGAGCT TTACGAGGTG AAGAAAATCT ATCAGAACAT CAAAGTGCGT
CAGATCTCAA TAGACACCTA CGAAGTGGAG AACGGGTATC TTTTCACAGA CCTTGAGATG
TTCGATGGAA CTTGGAGGAT CAGAAAGGAC GGTGAAGTGA TAGAAGAAGG AAGGTTCAAA
CTCTCAGCCG AGCCAGGAGA AAGGAAAATT TTTAAGATAC CACTTCCAGT GATGGAAGAC
TCGGAATACT TCCTTGAGAT CTGTTTTGCT CTCTCTGAAG ATACCCTCTG GGCGAAGAAG
GGACACGTTG TAGCGTGGGA ACAGTTCCTC CTGAAACCTC CCATCTTTCA AAAAAGCATT
GTTCAGGAAA AAGTAGATTT CTCAGAAGAT GGAAGATACC TTCTGGTGAG GACAAAAGAC
GCGGAGTTTA TCTTCTCGAA ACTCACCGGC CTTCTGGAGC ACATCGTGTA CAGGGGAAGA
AATATCCTGA CAGGATCGAT CGTTCCAAAT TTCTGGAGAG TTCCAACGGA CAACGATATC
GGAAACAGAA TGCCGGAAAG ACTCTCCATA TGGAAAAAGG CATCGAGCGA AAGAAAGCTC
TTCAAGATGT TCTGGAAGAG AAGGGAAAAC AGCGTTTCCG TTCAGAGTGT CTATCAGGTA
CCCGGAAACA GCTGGGTGTA CCTCACCTAC ACCATCTTTG GAAACGGTGA CATCCTCGTG
GATCTTTCCC TGATTCCCGC AGAAGGTGTA CCGGAGATTC CAAGGATCGG TCTTCAGTTC
ACGGTCCCTG AAGAGTTCGG CACCGTGGAG TGGTACGGAA GGGGACCGCA CGAGACTTAC
TGGGACAGAA AAGAAAGTGG CCTTTTCGCA AGGCACAGAA AAGCTGTCGA TGAGATGATA
CACAGGTACG TCAGGCCCCA GGAAACGGGG AACAGATCGG ACGTGAGATG GTTTGCGCTT
TCCGACGGTG AAACAAAACT CTTTGTGTCA GGCATGCCGC AGATAGACTT CAGCGTCTGG
CCCTTTTCCA TGGAGGATCT CGAGAGGGCT CAGCACATAA GTGAACTCCC GGAGAGGGAC
TTCGTCACCG TGAACGTGGA CTTCAGACAG ATGGGCCTTG GAGGAGACGA CAGCTGGGGT
GCGATGCCTC ATCTGGAGTA CAGGCTTCTA CCAAAGCCGT ATCGTTTTTC TTTCAGAATG
AGGATTAGCA AAGAGATTCC ATCCTGGAGG GTTCTTGCGG CGATCCCTGA AACGCTCCAT
GTTGAGATGT CCTCAGAAGA CGTGATACGC GAAGGAGACA CCCTGAGAGT GAAATTTTCC
CTTCTGAACG ACACTCCACT GAGCAAGGAA GAACAGGTGG TTCTCTTTGT TGATGGAAAC
GAATACTCGG TGAGGCGAGT GGTGATTCCA CCCTTCAAGA AGGAAGAGCT GGTGTTCAAA
GTAGAAGGAT TGAAGAAGGG AGAACATCTG ATACATACTA ATCTGAACAC GAGAAAAACT
ATCTACGTGA GGTGA
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| Protein sequence | MSYEWENPQL VGEGTEKPHA SFIPYLDPFS GEWEYPEEFI SLNGNWGFLF AKNPFEVPED
FFSENFDDSN WDEIEVPSNW EMKGYGKPIY TNVVYPFEPN PPFVPKDDNP TGVYRRWIEI
PEDWFKREIF LHFEGVRSFF YLWVNGKKIG FSKDSCTPAE FRLTDVLRPG KNLITVEVLK
WSDGSYLEDQ DMWWFAGIYR DVYLYSLPKF HIRDVFVRTD LDENYRDGKI FLDVEMRNLG
EEEEKDLEVT LITPDGDEKT LVKETVKPED RVLSFAFDVK DPRKWSAETP HLYVLKLKLG
EDEKKVNFGF RKIEIKDGML LFNGKPLYIK GVNRHEFDPD RGHAVTVERM IQDIKLMKQH
NINTVRTSHY PNQTKWYDLC DYFGLYVIDE ANIESHGIGW DPEVTLANRP EWEKAHLDRI
QRMVERDKNH PCVIFWSLGN EAGDGVNFEK AALWIKERDN TRLIHYEGTT RRGESYYVDV
FSLMYPKIDV LLEYASRKRE KPFIMCEYAH AMGNSVGNLK DYWDVIERYP YLHGGCIWDW
VDQGIRKKDE NGKEFWAYGG DFGDEPNNKN FCCNGVVLPD RTPEPELYEV KKIYQNIKVR
QISIDTYEVE NGYLFTDLEM FDGTWRIRKD GEVIEEGRFK LSAEPGERKI FKIPLPVMED
SEYFLEICFA LSEDTLWAKK GHVVAWEQFL LKPPIFQKSI VQEKVDFSED GRYLLVRTKD
AEFIFSKLTG LLEHIVYRGR NILTGSIVPN FWRVPTDNDI GNRMPERLSI WKKASSERKL
FKMFWKRREN SVSVQSVYQV PGNSWVYLTY TIFGNGDILV DLSLIPAEGV PEIPRIGLQF
TVPEEFGTVE WYGRGPHETY WDRKESGLFA RHRKAVDEMI HRYVRPQETG NRSDVRWFAL
SDGETKLFVS GMPQIDFSVW PFSMEDLERA QHISELPERD FVTVNVDFRQ MGLGGDDSWG
AMPHLEYRLL PKPYRFSFRM RISKEIPSWR VLAAIPETLH VEMSSEDVIR EGDTLRVKFS
LLNDTPLSKE EQVVLFVDGN EYSVRRVVIP PFKKEELVFK VEGLKKGEHL IHTNLNTRKT
IYVR
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