| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1542 |
|---|
| Symbol | |
|---|
| ID | 5170634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1532164 |
|---|
| End bp | 1534167 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640564069 |
|---|
| Product | carbohydrate binding module 27 |
|---|
| Protein accession | YP_001245126 |
|---|
| Protein GI | 148270666 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3934] Endo-beta-mannanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000596448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGGT TTATGTTCAT TTTATCGATC GTTGCTCTCT CTTTCGTTCT CTTTGCAGAT
GAGTTCGTGA GAGTGGAAAA CGGAAAATTC GTCCTTAATG GAAAAGAATT CAGATTCATT
GGGAGTAACA ACTACTACAT GCACTACAAG AGCAACAGAA TGATAGACAG TGTTTTGGAG
AGCGCCAGGG ATATGGGAAT AAAGGTGCTC AGAATCTGGG GTTTCCTCGA CGGGGAGAGT
TACTGCAGAG ACAAGAACAC CTACATGCAT CCTGAGCCCG GTGTTTTCGG AGTGCCGGAA
GGGATCTCAA ACGCCCAGAA TGGTTTCGAA AGACTCGACT ACACGATAGC GAAAGCGAAA
GAACTTGGCA TAAAACTCAT CATCGTTCTT GTGAACAACT GGGACGACTT TGGTGGGATG
AACCAGTACG TGAGGTGGTT CGGAGGAACC CACCACGACG ATTTCTACAG AGATGAAAGA
ATCAAAGAAG AGTACAAAAA GTACGTGTCT TTCCTCATAA ACCATGTCAA CGTCTACACG
GGAGTTCCTT ACAGGGAAGA GCCCACCATC ATGGCCTGGG AGCTTGCAAA CGAACTGCGC
TGTGAGACGG ACAAATCGGG GAACACGCTC GTTGAGTGGG TGAAGGAGAT GAGCTCCTAC
ATAAAGAGTC TGGATCCCAA CCACCTCGTG GCTGTGGGGG ACGAAGGATT CTTCAGCAAC
TACGAAGGAT TCAAACCTTA CGGTGGAGAA GCCGAGTGGG CCTACAACGG CTGGTCCGGT
GTTGACTGGA AGAAGCTCCT TTCGATAGAG ACGGTGGACT TCGGCACGTT CCACCTCTAT
CCGTCCCACT GGGGTGTCAG TCCAGAGAAC TATGCCCAGT GGGGAGCGAA GTGGATAGAA
GACCACATAA AGATCGCAAA AGAGATCGGA AAACCCGTTG TTCTGGAAGA ATATGGAATT
CCAAAGAGTG CGCCAGTTAA CAGAACGGCC ATCTACAGAC TCTGGAACGA TCTGGTCTAC
GATCTCGGTG GAGATGGAGC GATGTTCTGG ATGCTCGCGG GAATCGGGGA AGGTTCGGAC
AGAGACGAGA GAGGGTACTA TCCGGACTAC GACGGTTTCA GAATAGTGAA CGACGACAGT
CCAGAAGCGG AACTGATAAG AGAATACGCG AAGCTGTTCA ACACAGGTGA AGACATAAGA
GAAGACACCT GCTCTTTCAT CCTTCCAAAA GACGGCATGG AGATCAAAAA GACCGTGGAA
GTGAGGGCTG GTGTTTTCGA CTACAGCAAC ACGTTTGAAA AGTTGTCTGT CAAAGTCGAA
GATCTGGTTT TTGAAAATGA GATAGAGCAT CTCGGATACG GAATTTACGG CTTTGATCTC
GACACAACCC GGATCCCGGA TGGAGAACAT GAAATGTTCC TTGAAGGCCA CTTTCAGGGA
AAAACGGTGA AAGACTCTAT CAAAGCGAAA GTGGTGAACG AAGCGCGGTA CGTGCTTGCA
GGAAAGGTGG ATTTCTCTTC CCCGGAGGAG GTGAAAAACT GGTGGAACAG CGGAACCTGG
CAGGCAGAAT TTGAGTCACC TGACATTGAA TGGAACAGTG AGGTGGGAAA TGGTGCGTTG
CAGTTGAACG TGAAGCTGCC TGGAAAGAGC GACTGGGAAG AAGTGAGGGC AGCGAGGAAG
TTCGAAAAGC TCTCCGAATG TGAGATCCTC GAGTATGACA TCTACATTCC AGACGTCGAA
GGGCTCAAAG GAAGGTTGAG ACCGTACGCG GTTCTGAACC CCGGCTGGGT GAAGATAGGC
CTCGATATGA ACAACACAAG CGTGGAAAGT GCGGAGATCG TCACTTTCGG TGGAAAAGAG
TACAGAAAAT TCCACGTAAG GATTGAATTC GACAAGACAG CGGGGGTGAA CGAGCTTCAC
ATAGGAATTG TCGGTGATCA TCTGAAGTAC AATGGACCGA TTTTCATCGA TAATGTAAAA
CTCTACACAA AGGAGGCTGA ATAA
|
|---|
| Protein sequence | MRRFMFILSI VALSFVLFAD EFVRVENGKF VLNGKEFRFI GSNNYYMHYK SNRMIDSVLE
SARDMGIKVL RIWGFLDGES YCRDKNTYMH PEPGVFGVPE GISNAQNGFE RLDYTIAKAK
ELGIKLIIVL VNNWDDFGGM NQYVRWFGGT HHDDFYRDER IKEEYKKYVS FLINHVNVYT
GVPYREEPTI MAWELANELR CETDKSGNTL VEWVKEMSSY IKSLDPNHLV AVGDEGFFSN
YEGFKPYGGE AEWAYNGWSG VDWKKLLSIE TVDFGTFHLY PSHWGVSPEN YAQWGAKWIE
DHIKIAKEIG KPVVLEEYGI PKSAPVNRTA IYRLWNDLVY DLGGDGAMFW MLAGIGEGSD
RDERGYYPDY DGFRIVNDDS PEAELIREYA KLFNTGEDIR EDTCSFILPK DGMEIKKTVE
VRAGVFDYSN TFEKLSVKVE DLVFENEIEH LGYGIYGFDL DTTRIPDGEH EMFLEGHFQG
KTVKDSIKAK VVNEARYVLA GKVDFSSPEE VKNWWNSGTW QAEFESPDIE WNSEVGNGAL
QLNVKLPGKS DWEEVRAARK FEKLSECEIL EYDIYIPDVE GLKGRLRPYA VLNPGWVKIG
LDMNNTSVES AEIVTFGGKE YRKFHVRIEF DKTAGVNELH IGIVGDHLKY NGPIFIDNVK
LYTKEAE
|
|---|
| |