Gene Tpet_1486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1486 
Symbol 
ID5171561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp1470870 
End bp1472954 
Gene Length2085 bp 
Protein Length694 aa 
Translation table11 
GC content46% 
IMG OID640564012 
ProductRND efflux transporter 
Protein accessionYP_001245070 
Protein GI148270610 
COG category[R] General function prediction only 
COG ID[COG1033] Predicted exporters of the RND superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0030427 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTCGAAG AGTACACCTC TTTTGTTTTC AAAAACAGAA AGAAGATCTT CGCGGTGGTG 
CTGGTACTGA ACATTTTAGC ACTCTTTGGG CTTTTCAGAC TTCACTTCAC AACTGAGTTT
TCCATTCTGA TGCCTCAGAA ATCCCGTCAG AAAGAGATAT ACGAGAAGAT GAACGGCGTC
TTCAAAACAG GAGAACAGCT TGTGGTGATG GTGAAGACGA ACGTCGATCC CCTGAGCAGA
GAGGGAATAG ATGAGATCTT TGAAATAAAG GAAAAACTCT CCTCCGTTGA AGGTGTAAAG
ACTGTCATAC CACCCATTCC GGAGAAGTTT CCCGCTGGCT TCAGACTGGT GGAGACAAAG
AACATGTCCG AAGAGCAGTA CAGAGACTTT CTGAGCTATG TTGAAAACAT GAAAGACTTC
CTCAACGTGA GGAAAATGGA AGATGGATAC TACTCCCTAT TCATGATACT TCCCAGAAAC
AGTGTAAATC CCAATGAAAT CGAAAGTACT CTTTCAGGAT ATGAACATTA CCTCTCTGGA
ACACAGTATC TGGAAGACCA GATATTTCGC TATCTTCTGT TCATGATATT CACACTTCCC
CCACTCGCCG TTGTTCTTCT TCTGAACGTC TTCAGAGTAC AACTTGGAAG GTTCAGATAC
GCCATTTTAT CTTTGATACC GGCGGGATTC GCCGCCCTCT GGACGCTTGG CTACGTGATG
GGATGGATGG GCCAGAACCT TTCCATCATC ACGGTTCTGG TTCCCATATT CACCATCGTC
ATGGGAAGTG CCGATGGGCT TCACTTCGTT TCGCACTTTT TGGAACGAAA GAAAGATGGA
GAGAGTACGT TCAACGCCAT CAAAGATACT CTCGAGAGTG TTGGAAGGGC GATGATCCTC
ACCACACTCA CCACGATGGC AGGATTTCTC TCTTTTCTCA CTTTGAACTC TCAGTCCATG
AAACAGATGG GACTCCTCGC TGCTGCTGGA ATCGGTCTTG CGGGAGTTTC AACGTGGATC
GTACTTCCCG TAATACTGTC AGGAATGGAA GATGTTGAGA TCAAAAAGAA GGAAAGCAGC
CTGGCCCGGC TTTTTCAAAG ACTTTCAAAG CGAGCGTGGA TCATCACACT GGTGGTTCTT
TTCGCCTTCC TTCCAGGCAC ATTCCTTCTG AAGGCAGACC TCAACATTCT GAAACTCTAC
AAAGGCTACA CAAGGGTCAG AAAGAACGTG GAGAAGATAG AAGAGATCTT CGGAAGGGCT
CTGCCTGTTT ATGCCGTTTT CGAGTCAGAG AATCTGCTCT CTCCAGACTT TGCCCGGAAG
GTCCTTTCTA TGGAGGAAAA ACTGAAGAGC AAAGGATACG ATGCCTTTTC CGTCTACGAC
ATCCTTGTGA GGATGAACGA ACATCTCTTC AAAGAAGAAG GTTACCCGAA AATCCTTGCA
AGGGCGCTGA TACTCAAAAG ACTTCTTCCA GAGGATTACA CGAGCAACTT TCTATCCGAA
AGCACAGGAA GAGCTTTTAT CTTTCTGGAT AACCTGGACA GAAACACTCT CGAGGAAGTG
GAACACATAG TGAAAGAAAG CGGCTTTCAG GTGACAGGGC TTCCCTACAT CATAAAAGAG
ATGAACGACT CGATCGTTCC TCAGCAGGTA CTTTCGGTGG TGCTTGCTGT CAGTATGGTC
TTTCTCCTTC TTGTTCTGTT TCAGAGAAGT TTTGTCATTC CGGCAAAGGC GATCGTTCCT
GTTTTGATCT CGCTTGTGTC TCTTTTTGGC TTCATGGGGC TTTCTGGAAT TCCTCTGAAC
CTGATCACGG CAAACATGGC CGGAATAGTG ATCGGGGTTG GTATAGACTA CGCCATACAT
GTGACGGAGC TGTTCAGATA TTACAGAGAT CTGGAAAAGA CGGTAAAGAT CGCATCCACA
CCAATTCTGG CAAACGCCTT TGGTCTTTCT GTGGGGCTTT CCGCTCTGAT TCTGTCTCCC
TTCACGTTCC ACACTTATCT TGTCGCAATC ATGTGGGTCA CAATGACCGT GAGTTCTTTC
ATGAGTCTTG TGGTCTTGCC GAAACTTCTG GAGGTGAAAA GATGA
 
Protein sequence
MFEEYTSFVF KNRKKIFAVV LVLNILALFG LFRLHFTTEF SILMPQKSRQ KEIYEKMNGV 
FKTGEQLVVM VKTNVDPLSR EGIDEIFEIK EKLSSVEGVK TVIPPIPEKF PAGFRLVETK
NMSEEQYRDF LSYVENMKDF LNVRKMEDGY YSLFMILPRN SVNPNEIEST LSGYEHYLSG
TQYLEDQIFR YLLFMIFTLP PLAVVLLLNV FRVQLGRFRY AILSLIPAGF AALWTLGYVM
GWMGQNLSII TVLVPIFTIV MGSADGLHFV SHFLERKKDG ESTFNAIKDT LESVGRAMIL
TTLTTMAGFL SFLTLNSQSM KQMGLLAAAG IGLAGVSTWI VLPVILSGME DVEIKKKESS
LARLFQRLSK RAWIITLVVL FAFLPGTFLL KADLNILKLY KGYTRVRKNV EKIEEIFGRA
LPVYAVFESE NLLSPDFARK VLSMEEKLKS KGYDAFSVYD ILVRMNEHLF KEEGYPKILA
RALILKRLLP EDYTSNFLSE STGRAFIFLD NLDRNTLEEV EHIVKESGFQ VTGLPYIIKE
MNDSIVPQQV LSVVLAVSMV FLLLVLFQRS FVIPAKAIVP VLISLVSLFG FMGLSGIPLN
LITANMAGIV IGVGIDYAIH VTELFRYYRD LEKTVKIAST PILANAFGLS VGLSALILSP
FTFHTYLVAI MWVTMTVSSF MSLVVLPKLL EVKR