| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1387 |
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| Symbol | alaS |
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| ID | 5170276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1379231 |
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| End bp | 1381822 |
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| Gene Length | 2592 bp |
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| Protein Length | 863 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640563913 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001244977 |
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| Protein GI | 148270517 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.115833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATACA TGACTTCCGA AGAGATCAGA GAAGCTTTTT TGAAATTCTT TGAGAAAAAG
GGACACAAGA TACTACCGAG TGCTTCTCTC ATACCGGACG ATCCTCAGCT TCTCTTCACC
GTGGCCGGCA TGGTTCCTTT CAAGCCCATT TTCTGGGGCA AAGTCGAACC CGTTTACACG
AGGGTGGCTA CCTGTCAGAA GTGTTTGAGA ACCGTTGATA TAGAGAACGT GGGAAAGACT
CCAAGGCACC ATACGTTCTT TGAAATGCTC GGTAATTTCT CCTTTGGAGA CTATTTCAAA
GAAGAAGCCA TAGAGTGGGC CTGGGAGTTT CTCACCCAGG TGCTTGGGGT TCCTGAAGAA
AAACTGTGGG TCTCCGTCTA CGAGGAAGAC GAAGAGGCCT TCAGAATCTG GAACGAAAAG
ATAGGTCTTC CCGAGAAGAA AATTTTGAGA ATGGGAAAAG AAGACAATTT CTGGGGGCCG
GCTGGGCCAA CGGGGCCGTG CGGTCCCGAT ACGGAGATCT TTTACGATAC AGGGTACTCG
AAGGGCTGTC CTGAGGGCGA AGAGTGTACT CCTGCCAATT CTGAAGGGCG ATTCGTGGAG
ATATGGAACC TTGTTTTCAC CGAGTATTAC CAGGACGAAG AAGGAAAGCT CCATCCGCTT
CCACGAAAGA ACATCGATAC GGGAGCTGGT CTTGAAAGGT TCTGTGCGAT GATGCAGGGA
GTTTACAGCA ATTTCGACAC AGATCTGTTC CAGCCGATAA TAAACCGCAT AGAGGAATTG
ACGGGGGTTG GCTACAAAAC AGATGAAGAA AAAGACGTTT CCATCAGGGT CATAGCCGAT
CATATGAGGG CCATCACCTT CCTGATCAGT GAAGGTGTTT TCCCTTCCAA CGAGGGAAGA
GGATACGTTC TCAGAAGGAT CATAAGACGC GCGATGAGAC ACGGAATACT CCTTGGCATG
AGTGAACCGT TCCTTTACAG AATCGTTGAT GCTGTGGCGG AGAAGATGGG AAAGGTCTAT
CCGGAGATCG TTCGCGGTGA AAGTATGGTG AAAGAAGTTC TCTCTGCAGA AGAAAGCAGA
TTTCTAAAGA CTCTCGAGCA GGGAATGAAG GTCTTCGACG AGATCGTTGA GAAAAAGGGA
AGGATAGATT CCGAAGACGC GTTCAAACTC TACGACACAT ACGGACTTCC ACTGGAACTC
ACACTCGAAA TCGCAAGGGA GAAGGGTGTG GAAGTCGATG TGAAAGAATT CAACAAATAC
ATGGAAGAAC AACAGCGAAA GTCAAGGGTT GCTCTGGGAG ATGTGGAATT TGCCAGGAGG
TACGAGTACC TTGAAGAACT CCCCAAAGAT TTCCGAACCG AATTCACTGG GTACGAAAAA
CTCGAGGATG AGGGTGAGGT CGTCCTCATA GCCAAGAACG AAAAAGCGGT GGAAGATGCA
ACAGAAGACG CGGTGGAAGT AGTGTTTTCA AAAACACCAT TCTACGCTGA GAAGGGTGGT
CAGGTATCCG ACACGGGAAC GGTGGAATGG GAAGATGGAA AAGCGCTTGT AGAATACGTT
TTTGAAGCTT CAGAGGGTGT GATCGTCCAC AGAATCAAGG TACTGGCCGG CACTCTGAGA
AGAGGTCAGA AAGTGGTTCT CAGAGTGGAT AAGAAGAGAA GAGAGGCCAC AATGAGAAAT
CACACGGCGA CGCATCTACT TCACGCGGCT TTGAAGAAGG TCCTGGGAGA CCACGTGAGG
CAGGCAGGAT CCTTGGTTGC ACCCGACAGG CTGAGATTTG ATTTCACACA TTTCAAGGGT
CTTTCGATGG CAGAAATAGA ACAGGTGGAG AATCTGGTGA ACGAATGGAT CATGGAAGCG
ATTCCGGTCG AGGTGAGGTA CACAAGCTAC GAAGAAGCGG TAAAGTCCGG AGTTGTTGCG
CTTTTCACGG AAAAGTATGG AGATGTGGTC AGGGTCGTCG AGGTTCCTGG TGTGAGTAAA
GAACTCTGTG GCGGAACGCA TGTGAGCAAC ACAGGGCAGA TAGGTCTGTT CAAGATCATC
TCGGAGGAAT CCGTTTCGTC AGGTGTGCGA AGAATCGAAG CGGTCACTGG CTTTAGTACC
CTGGAACTCC TGAGAAACCA GAAAAAACTG ATCGATCAGC TGAAAGAAAT CCTCGGAGCA
AGGGAAGACG AGCTCACGGA CAGGGTTCTG GGTTTGAGAG AGAAAGTGAA GGAACTCGAA
AAGAAACTCT CTCAGGGAAG GATTTCCGAA GAAAAGATAG CCATGAAACA GCTGGAAGAT
GGTGCGAGGG TCTTCTACGC TGTTTTTGAA GATGTCGAAG CAAAACACCT TGGAGGAATA
GCGGACAACG TTTTGAAAAA GGAAAGGGAA GGCATTGTTA TTCTCCTCAG TAAGTTCGAA
GACAAGGTTT CCCTCGTTGT GAAGGTTTCT GAGAATCTCC TTGACAAGTA CGATGCCTCT
TCCATAGCAC GGAACATAGC GAAGGAACTC GGTGGAAGTG GAGGGGGCCG AAGGAATTTT
GCCCAGGCGG GTGGAAGACA TCCGGAAAAG ATAAGAGGCG TTCTGGAACG TCTCGAAGAG
TTTCTGAGGT GA
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| Protein sequence | MRYMTSEEIR EAFLKFFEKK GHKILPSASL IPDDPQLLFT VAGMVPFKPI FWGKVEPVYT
RVATCQKCLR TVDIENVGKT PRHHTFFEML GNFSFGDYFK EEAIEWAWEF LTQVLGVPEE
KLWVSVYEED EEAFRIWNEK IGLPEKKILR MGKEDNFWGP AGPTGPCGPD TEIFYDTGYS
KGCPEGEECT PANSEGRFVE IWNLVFTEYY QDEEGKLHPL PRKNIDTGAG LERFCAMMQG
VYSNFDTDLF QPIINRIEEL TGVGYKTDEE KDVSIRVIAD HMRAITFLIS EGVFPSNEGR
GYVLRRIIRR AMRHGILLGM SEPFLYRIVD AVAEKMGKVY PEIVRGESMV KEVLSAEESR
FLKTLEQGMK VFDEIVEKKG RIDSEDAFKL YDTYGLPLEL TLEIAREKGV EVDVKEFNKY
MEEQQRKSRV ALGDVEFARR YEYLEELPKD FRTEFTGYEK LEDEGEVVLI AKNEKAVEDA
TEDAVEVVFS KTPFYAEKGG QVSDTGTVEW EDGKALVEYV FEASEGVIVH RIKVLAGTLR
RGQKVVLRVD KKRREATMRN HTATHLLHAA LKKVLGDHVR QAGSLVAPDR LRFDFTHFKG
LSMAEIEQVE NLVNEWIMEA IPVEVRYTSY EEAVKSGVVA LFTEKYGDVV RVVEVPGVSK
ELCGGTHVSN TGQIGLFKII SEESVSSGVR RIEAVTGFST LELLRNQKKL IDQLKEILGA
REDELTDRVL GLREKVKELE KKLSQGRISE EKIAMKQLED GARVFYAVFE DVEAKHLGGI
ADNVLKKERE GIVILLSKFE DKVSLVVKVS ENLLDKYDAS SIARNIAKEL GGSGGGRRNF
AQAGGRHPEK IRGVLERLEE FLR
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