| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1349 |
|---|
| Symbol | |
|---|
| ID | 5170093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 1340084 |
|---|
| End bp | 1341715 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640563874 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_001244939 |
|---|
| Protein GI | 148270479 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.143474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCAT TTGAATTCAA CGATGAAATC CTCAGCCAGT ACGAACCTGA GGAGTTCAGA
AGGGGGCAGA TCGTAACGGG AGTGGTTATA GGTAAGGAAG ACGGCGGCGT GGTGGTGGAT
TTCGGGGGAA AAAGTGAAGG ATTCGTACCG GAGAACGAAC TGATCAAATC ATTAGATGAG
TACAAAGTGG GTGAGAATCT CACCCTTCAA ATACTGAATC TGAACTACGA AGAGAGATCT
ATTCTCTCAG AGAGGAGACC CGTTCTTCGA AAAACACTCG AAGAGTTGAG AAAAGATTAC
GAAGAAAAGA AACCTGTGAA AGCCCGCATT GTTTCGCAGA CAAAGGGAGG ATACAACGTT
TTATTGAAAG GAGTAGTCTC TGCTTTTCTT CCAGGATCAC ACTCTCTTCT CAGAAGAAAC
GATCCTATAC CTGAAAAAGA AATAGAAGTC ATCATTCTGG AAATGGTACA GACAAAACGG
GGATCCAGAA TAGTTGTTTC GCGAAGAGCT CTCCAGGATA GGAAAATTGA AGAGTTCTTC
TCAGAAAAGA AAGTGGGGGA TATCATAGAA GGTACCGTGA AAGGGATCAG CAACGCAGGT
GTCGAGGTTG AAATTTCGGA GGGAATTAGG GGATTCATCC CCAAGAGCGA ACTCAGCTAC
GACAACAGGA TATCCCCTGA AGACGTAGTG AAACCCGGCC AGAACATAAC AGCGAAGATA
ATCGAACTGG ACGAGAGAAA AAAGAACGTC ATCCTGAGTT TGAAAAGACT CATGCCCGAT
CCGTGGGAAA AAGTGAAGGA GAAATACCCG GTTGGAAAAG TGGTGGGTGG AGAAGTTATT
TCGATTCATT CGTTTGGATT TTTTGTGAGG CTGGAGCCCG GTGTGGAAGG ACTCGTTCCG
AGATCTGAGG TCTTCTGGGG GAATGCAAGA AAAAACCTAG AAGAAGTAGT GAGTGTTGGA
GATCTGGTGA AGGTTGAAGT TATCAATGTA GATAAAGAAA ACAGAAAACT CACTCTGAGT
TACAGAAAAG CAAAGGGAGA TCCATGGGAA AACATCGAGG ACAGATACAA TGTCAACAAC
GTGGTGACGG GAAAGGTGAC AGGAATCATA AAACAGGGAG CTTTTGTCGA GTTAGAAGAA
GGCGTTGAAG GATTCGTCCC CGTCTCTGAA ATTTCGTGGA AAAGAATCGA CGAACCCGGA
GAAATTCTAA AGATCGGTGA AAAAGTGAAG GTGAAGATCT TGAAGATAGA CAAAGAAAAC
AGAAAGATCA CTCTCAGCAT AAGAAGAACC CAAGAAAATC CTTGGGAACG TGCACTCAAA
GAGTTGAAAC CAGATTCTAT TGTGAGGGGG ACCATAGAAA GAATCGTGAA CTCAGGAGTG
ATAGTAAAAG TCGAAAAGTA CGATGTGGAA GGTTTCGTGC CGAACAACCA TCTTGTCAGT
GAACCTGAAA CGGGGAAAAT TTTAAACCTC GTTGTTCTTA GAATAGATCC CGATGAAGTG
TTTGGCGGAA GAATGATACT GAGTGAGAAG CGATATGAAG AGAGAAAGAA CATAGAGGAG
TACAAAAAAA TGGTAGAGAA GGAGAGTTCT CAGAAAACCA TTGGAGACCT TCTCAAGAAG
AATGGAGAGT GA
|
|---|
| Protein sequence | MEPFEFNDEI LSQYEPEEFR RGQIVTGVVI GKEDGGVVVD FGGKSEGFVP ENELIKSLDE
YKVGENLTLQ ILNLNYEERS ILSERRPVLR KTLEELRKDY EEKKPVKARI VSQTKGGYNV
LLKGVVSAFL PGSHSLLRRN DPIPEKEIEV IILEMVQTKR GSRIVVSRRA LQDRKIEEFF
SEKKVGDIIE GTVKGISNAG VEVEISEGIR GFIPKSELSY DNRISPEDVV KPGQNITAKI
IELDERKKNV ILSLKRLMPD PWEKVKEKYP VGKVVGGEVI SIHSFGFFVR LEPGVEGLVP
RSEVFWGNAR KNLEEVVSVG DLVKVEVINV DKENRKLTLS YRKAKGDPWE NIEDRYNVNN
VVTGKVTGII KQGAFVELEE GVEGFVPVSE ISWKRIDEPG EILKIGEKVK VKILKIDKEN
RKITLSIRRT QENPWERALK ELKPDSIVRG TIERIVNSGV IVKVEKYDVE GFVPNNHLVS
EPETGKILNL VVLRIDPDEV FGGRMILSEK RYEERKNIEE YKKMVEKESS QKTIGDLLKK
NGE
|
|---|
| |