Gene Tpet_1292 details

Gene Information

• Locus tag: Tpet_1292
• Symbol: rplC
• ID: 5171458
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 1302600
• End bp: 1303223
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640563817
• Product: 50S ribosomal protein L3
• Protein accession: YP_001244882
• Protein GI: 148270422
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000000000263563
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGATGA TAATTGGAAG AAAAATCGGT ATGACGAGAG TATTCGTTGG AAATGATTCC 
GTTCCCGTTA CAGTCATAAA GGCGGGGCCC TGTGTGGTTG TCCAGAAAAA AACCGTTGAG 
AAAGACGGAT ACAACGCTGT GCAGCTTGGA TTCGAGAAGG CTAAGAAGGT CAACAAACCT 
CTCGCAGGAC ACTTCAAAAA ATTCGGTGTG GAACCGATGA AAATACTCAG AGAGTTCAGA 
GTAGAAAATC CCGACGAGTA CGAACCCGGA CAGGTAATAA AGGTTGACGT GTTTGAAAAA 
GGTGAGTACG TGGACGTTAC TGGCTGGACA AAAGGAAGAG GATTCGCTGG TGCGATGAAA 
AGATGGGGAT TCAGCGGTGG ACCGAAGAGC CACGGTTCCA AATTCCATAG AGAACTCGGT 
TCTGTTGGTC AGCACACGGA ACCTGCCAAG ATATGGAAAG GTAAGAAAAT GCCCGGAAGA 
TATGGAAACG AGAGGGTAAC TGTCAGAAAT CTTCAAGTTG TGGATATCGA TCCTGAAAAC 
GACCTTTTAG TGGTCAAAGG TGGAGTCCCT GGAGCGAGGG GCGGGCTCGT TTTGATCAGG 
AGCGCCAAGG CCCCGAAAAA GTAA 

 

Protein sequence

MKMIIGRKIG MTRVFVGNDS VPVTVIKAGP CVVVQKKTVE KDGYNAVQLG FEKAKKVNKP 
LAGHFKKFGV EPMKILREFR VENPDEYEPG QVIKVDVFEK GEYVDVTGWT KGRGFAGAMK 
RWGFSGGPKS HGSKFHRELG SVGQHTEPAK IWKGKKMPGR YGNERVTVRN LQVVDIDPEN 
DLLVVKGGVP GARGGLVLIR SAKAPKK