| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1270 |
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| Symbol | |
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| ID | 5170881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1283061 |
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| End bp | 1283771 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640563795 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001244860 |
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| Protein GI | 148270400 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000437124 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGTGCTATT CGGCCAATGG GAACACCTTC CTCATAGTTG ACAACACGCA AAAGAGGATA
CCCGAAGAGA AAAAACCAGA TTTTGTCAGG GAAAACGTGG GCGATCTGGA TGGAGTCATA
TTCGTGGAGC TGGTCGATGG GAAATACTTC ATGGACTACT ACAACCGCGA TGGGAGTATG
GCGGCCTTCT GTGGGAACGG CGCAAGGGCC TTTTCTCAGT ACCTCATAGA CAGGGGCTGG
ATCAAAGAAA AAGAATTCAC TTTCCTTTCC AGAGCTGGAG AAATAAAGGT AATCGTTGAC
GACAGTATCT GGGTGAGGAT GCCGGGTGTT TCAGAAAAGA AAGAGATGAA GGTGGATGAT
TACGAAGGAT ATTTCGTCGT TGTGGGCGTT CCTCATTTCG TTATGGAAGT GAAAGGAATC
GACGAACTGG ATGTGGAAAA ACTCGGAAGA GATCTCAGGT ACAAAACAGG CGCGAACGTG
GATTTCTACG AGGTACTTCC CGACCGCCTC AAGGTGAGAA CATACGAAAG AGGAGTGGAA
AGGGAAACAA AAGCCTGTGG AACGGGTGTT ACGTCTGTTT TCGCCGTGTA TCGAGATAAA
ACAGGGGCAA AAGAGGTGAA GATCCAGGTA CCAGGAGGTA CGCTCTTTCT GAAAGAAGAA
AACGGAGAAA TCTTTCTCAG GGGGGATGTG AAAAGATGTT CAGAGGAGTA G
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| Protein sequence | MCYSANGNTF LIVDNTQKRI PEEKKPDFVR ENVGDLDGVI FVELVDGKYF MDYYNRDGSM
AAFCGNGARA FSQYLIDRGW IKEKEFTFLS RAGEIKVIVD DSIWVRMPGV SEKKEMKVDD
YEGYFVVVGV PHFVMEVKGI DELDVEKLGR DLRYKTGANV DFYEVLPDRL KVRTYERGVE
RETKACGTGV TSVFAVYRDK TGAKEVKIQV PGGTLFLKEE NGEIFLRGDV KRCSEE
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