| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1240 |
|---|
| Symbol | |
|---|
| ID | 5170728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 1254526 |
|---|
| End bp | 1255521 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640563764 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001244830 |
|---|
| Protein GI | 148270370 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1180] Pyruvate-formate lyase-activating enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGGA TGGCTTTGCA CTTTGAAATT CTTGAGAATG GAAAAGTTAA GTGCCTTCTG
TGTCCGCATG AATGTGTGCT CGATAACGGA CAAATTGGGT TGTGCGGTGT GAGAAAGAAC
AAAAACGGCT CTCTGGTGAG TCTGAACTAC GGTGAAGTAA CAGCAATCGC TATGGATCCC
ATAGAAAAGA AACCGCTTTT CCACTTCAAT CCTGGTGAGC AGATATTCTC TGTGGGAACT
TTCGGCTGTA ATTTCAAGTG CGGTTTCTGT CAGAACTGGG AGATTTCGCA AGCAAAGCCA
GAAACCAAAA GAGTCACTCC AGAACAGCTT GTCAAGATAG CCCAGATGAA CAGAAACTCA
AAAGGAATCG CTTTCACATA CAACGAGCCT CTTGTCTGGT ACGAGTTCGT TCTCGACACG
TCTCGTGTGG CTGTGAGAGA AGGTATGTAC TGCGTTCTTG TGACCAACGG TTTTATAAAC
GAAGAACCTC TGGAACTCCT CTTTCAGTCC GTGCATGCGA TGAACATAGA TCTCAAGGGA
TTCAACAGAG ATTTCTACAG GGAGATCGGG GGAGATTTGG ACGTGGTCCT CAGAAACATA
GAGAAGGTTT ACAACGCAGG AATTCACGTT GAGCTCACCA CGCTGATAAT TCCGGGAAAG
AACGACGACA AAGAAGACCT GAGGAGAGAA TTCGAGTGGA TCGCTGATCT GGACAAAGAC
ATCCCTCTTC ATATAAGCCG CTACTTTCCA AATTACAAGT ACACCATACC TCCAACGCCG
ATAGAAGAGC TCATCGAGAT ATACGAGATG GCCAGAGAGT ATTTAAATTT CGTCTACCTC
GGTAACGTGT GGGACGAAAG ATACGAGAGC ACTTTCTGCC CGGATTGCGG AAATCTTGTG
ATCAGAAGAC AGGGATATGA AGTGGAAAAA GTGGGACTGG ATGAAGAAGG GAAGTGCACA
AAATGTGGCC GTCAGATAGC AACGATCATC GGGTAA
|
|---|
| Protein sequence | MERMALHFEI LENGKVKCLL CPHECVLDNG QIGLCGVRKN KNGSLVSLNY GEVTAIAMDP
IEKKPLFHFN PGEQIFSVGT FGCNFKCGFC QNWEISQAKP ETKRVTPEQL VKIAQMNRNS
KGIAFTYNEP LVWYEFVLDT SRVAVREGMY CVLVTNGFIN EEPLELLFQS VHAMNIDLKG
FNRDFYREIG GDLDVVLRNI EKVYNAGIHV ELTTLIIPGK NDDKEDLRRE FEWIADLDKD
IPLHISRYFP NYKYTIPPTP IEELIEIYEM AREYLNFVYL GNVWDERYES TFCPDCGNLV
IRRQGYEVEK VGLDEEGKCT KCGRQIATII G
|
|---|
| |