Gene Tpet_1216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1216 
Symbol 
ID5170971 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp1236827 
End bp1237630 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content47% 
IMG OID640563740 
Producthemolysin A 
Protein accessionYP_001244806 
Protein GI148270346 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1189] Predicted rRNA methylase 
TIGRFAM ID[TIGR00478] hemolysin TlyA family protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000350473 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGATA AGAAGAGATT AGACCAGCTT GTTCTGGAAA GAGGACTCGT GGAGAGCAGG 
GAAAAAGCGA AGGTGTTGAT ACTGGCGGGG AAGGTTCTCG TGAACGGAGA AAGGGTTACA
AAGGCCAGTA AACTCGTTCC AGAAGATGCC AATGTCGAAC TCCTGGAGGA GCCAAAGTAT
GTGAGCAGAG GAGGGTACAA ACTCGAGTCT GCCTTCGAGA GCTTCAAAAT AGACGTTTCA
GGGAAAGTCG CGTGCGACAT AGGAGCGTCC ACGGGGGGAT TCACGGATTT TCTTCTCCAG
CGTGGAGCGA AGAAAGTGTA CGCTGTGGAT GTGGGGTACG GCCAGCTTCA TTGGAAATTG
AGAAACGATC CTCGGGTTGT TGTGATGGAA AAGGTGAACG CTCGTTATTT AAATCCTGAT
GATCTGGGAG AGAAAGTGGA TGTTGTAACC TGCGATGTGT CTTTCATCTC TTTGAAAAAG
ATCATCCCTG CCATTTCCAG GATACTGAAG AACATCGGTG ATGCTGTTTT GCTCGTGAAG
CCTCAGTTTG AAGCTCCAAG AAAATTCGTA AAAAAGGGTA TCGTAAAGGA TCCAGGTGTT
CACCTTGAAG TGCTGGAGGA AATACGAAAG AGCCTGATCG AGAACGGTTT TGTTGTGAAA
GGATGCTGTT TTTCAAAAAT CAAAGGAACG GAAGGGAACA TAGAGTACTT TTTCTGGGTC
AAAAAGGAAG GAGAGAACGC TGAAATAGAC CTGAGAAAAA TCGTGGAAGA AGCCTGGAGG
TTTTTTGGGG AGAGGGAAAG ATGA
 
Protein sequence
MADKKRLDQL VLERGLVESR EKAKVLILAG KVLVNGERVT KASKLVPEDA NVELLEEPKY 
VSRGGYKLES AFESFKIDVS GKVACDIGAS TGGFTDFLLQ RGAKKVYAVD VGYGQLHWKL
RNDPRVVVME KVNARYLNPD DLGEKVDVVT CDVSFISLKK IIPAISRILK NIGDAVLLVK
PQFEAPRKFV KKGIVKDPGV HLEVLEEIRK SLIENGFVVK GCCFSKIKGT EGNIEYFFWV
KKEGENAEID LRKIVEEAWR FFGERER