| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1107 |
|---|
| Symbol | |
|---|
| ID | 5169953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1136278 |
|---|
| End bp | 1137204 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640563624 |
|---|
| Product | HflK protein |
|---|
| Protein accession | YP_001244697 |
|---|
| Protein GI | 148270237 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | [TIGR01933] HflK protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGAAAAT ACGTGTGGAT AGTCGTTTTC ATCGTGCTGG GAATCTACTT TCTCACCGGT
GTGTATCAGG TAGGACCCTC CGAAGTCGCC CTCCTCAAGA CTTTTGGAAG ATTCACCTCG
GTCGTTCCTT CAGGAATCCA CTACCACCTG CCGTATCCGA TTCAGTCTCA TGTGACCGTC
GACGTCACAA CTGTGAGAAA GATCGAAATA GGATTCAGAA GCATTCAACG AGGGGAGAGG
ATCTCTTACC AGTCGGTTCC TCAAGAAGCC ATAATGATCA CAGGAGACAA CAACCTCGTG
AGTGTGGAAG CGGTGGTTCA GTACAGGGTG AAAGACCCCG TCGCTTACGC CTTCAACATC
ACAGAAGCGG ATTCCATCGT GAGATTCACA ACAGAATCTG TTCTTCGTGA GAAGGTAGCG
ATGAGAAGCA TCGACGACGT TCTCACCTCA GGAAGAGATG AAATAGGATT CAAAACTGCC
CAAATGCTCC AGGAGATTCT CGATTCCTAC AACTGCGGTA TAAAGGTGGA AAACGTTTAT
CTCCAGGAAG TGGTCCCGCC AGATCCCGTT GTTGACGCCT TCGACGATGT GAACAACGCT
CGTCAGGACA AAGAACGTCT CATAAACGAG GCAAGAAAAT ACGCCAACGA CGTTGTTCCA
AAAGCCCAGG GACAGGCACA AGAGATACTG AGACAGGCAG AGGCCTACGC TCAGGAAGTT
TATCTGAAAG CACTCGGCGA AGCGAAAAGA TTCGAAGAGG TGCTGGAAGA ATACTCAAAG
GCTCCTGATA TCACGAGAAA ACGAATGCTC CTCGACGCTC TCCAATCTTT GCTTGAAAAA
TCCGAAAACA AGGTTTTCTT CGTGGGAAAC GGTGATTCTC TGAACATTCT CAACATTTCC
GACCTTCTGA AGGGGATGGG AAAATGA
|
|---|
| Protein sequence | MRKYVWIVVF IVLGIYFLTG VYQVGPSEVA LLKTFGRFTS VVPSGIHYHL PYPIQSHVTV
DVTTVRKIEI GFRSIQRGER ISYQSVPQEA IMITGDNNLV SVEAVVQYRV KDPVAYAFNI
TEADSIVRFT TESVLREKVA MRSIDDVLTS GRDEIGFKTA QMLQEILDSY NCGIKVENVY
LQEVVPPDPV VDAFDDVNNA RQDKERLINE ARKYANDVVP KAQGQAQEIL RQAEAYAQEV
YLKALGEAKR FEEVLEEYSK APDITRKRML LDALQSLLEK SENKVFFVGN GDSLNILNIS
DLLKGMGK
|
|---|
| |