| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0953 |
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| Symbol | |
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| ID | 5171074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 979772 |
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| End bp | 982216 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640563471 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001244547 |
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| Protein GI | 148270087 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0761659 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGAAGGT CCTTTTTCAC GTTTCTTCTA ATTCTAGCTG TGAGTTTGTT TGCTGTTTCC
TGGCGCGATG TTGTGCTTTA TGAAATCATG ATAGACAGAT TCAACGATGG GGATCCAACG
AACAACGATC AAGGTTATGG AGAATACGAT CCTTCTGATC CAGCAAAGTA TAGCGGAGGA
GATTTGAAAG GAATAATTGA TAAGCTTGAT TATATCAGAG GTCTGGGAGT AGATGGAATA
TGGATTACTC CTCCAGTAGC CAACCAGTGG TGGGATCCGT GGGTTAATTA CGGTGGATAC
CATGGATACT GGGCAAGGAA TTTTAAGGAA GTAGACGAAC ATTTTGGGAA TATCGAGACA
TACAGGAAGC TTTCAGAAGA AATTCACAGA AAAAATATGT TTCTCATCCA AGATATAGTT
GTCAACCATG TTGGAAACTA TTTCAGATTC AAAGCTGGAA AATTCGAAAT TAACACAGGA
AGTGTTCCAA CTTTCGCACC AACTCAATTC CCCTTCAATA TGAATGACTA TAATGATCCG
AAACAGAGAG AAATGAATGT CTACCACTGG ACTCCTGATA TCACTAATTA CAACGACATT
CATCAAAAGC TCAACTATCA GCTTTCAGGT CTCGATGATT TAAATACTGA AAATCCGATG
GTCAGAAGCG CTTTGAAAGA CTCCTATGGT TTCTGGATAA AAGAGGTTGG TGTTGACGGC
TTCAGAGTGG ATACTGCGAT GTACGTTCCA AAAGATTTCT GGGATGATTT CTTCTTTGGC
AAAGACGGAA TAATGACCTT GAAAGATGAT TTCATCGCTT TTGGTGAAGC ATGGCTCACT
TCTCCACCGA TGGATGACAG TGCAGAAAAG GAAATAGAGA GTTATTTTGA CCATGGTTTT
AACGCCATGC TTGACTTTCC GCTTTGTGAA GAAATACGTC GAGTTCTAAA AGGTGGGAAA
CCAACTTCAT GGCTTGCTTA CAGAATAGAA AGGCGTAATC AAACGCTTGA AAAAGGACTT
CTGGTCACTT TCATTGACAA TCATGATATG GAGCGATTCA GCAGGGGAAC GGACGAGAAG
ACATTGAGAA TGGCAGTCGC TTTTCTAATG ACTTTACCTG GAATTCCTGT TATTTACTAT
GGAACAGAAC AGTCTTTTGA AGAAACACGG GCTTCGATGT TTGCAAAGGG ATGGGGATCG
GGCGGTAAGG ATCATTTTGA GAAAGGGGAG ATGTACGATT TCATAAAAAG TGCCGTTGAG
TTCAGAAAGA GTCACACTGC AACGAGATAC GGTAAGGTCA AAGTTCTTCT GTCGAATTCA
GAAGGTGCAG GGCTTCTGGT TTATGAAGTA AAAGATGAGA ATGAAACGCT CATTGTGGTT
TTAAACACAT CTAATAATGA CAAGATTAGA ACCATCGATG GTGTGTTTCC TAGTATGGAA
AAGGTATTCT CAAGTGATAG AGAGGCTAGG GTTGTTGTTC AGGAAAAGTC CACGGTCTTT
ATCGTTCCTC CAAAGAGTCT TACCGTCTTC AAGCTTTCCT CTGTGAATAA ATATGAGAAA
CAGACAACGA ATTTGACGTT AAAAACCACC GTGAACATCT ACGAAGATAG AGTAGTAATA
TCCGGTGAAA CGAACGGCAA AAGAATGTAC GCCTACATTG ATGGTTTATA TCAAACCATT
CCCGAGAAAG TGAATATTGT CGATGGTAAA TACAGTCTTT CCCTGGATCT TTATAAAATG
GGTCCTGGAA ACCATTTCAT TATTTTGAAG GTTTACGGAT CCAATCCCAA AGAAGTCCTT
TATTCTGAAG AAATCTGGTT TGAGGTGTCT ATACCTACCG AAAAACTCGC AGAAGTGACA
GATCCTATGA ATGATGATCA TGGGCCTTTC GGCAGATATA AATATCCACT TGATTTAACT
TTCAAGCGGC AAATGGACCT TATTGGTGCA AAGGTGGAAC GCATGGGACC TAATTTGATT
GTCTGGATAA AAACGAGAGA AATTACTACG AGCTGGAACC CACCGCTTGG ATTCGATCAT
GTGAGTTTTC AAATATTCCT TGATGATCCG AGAAGAAAGG GAGCAGAAGC GTTGCCATTT
CAAAATTACG CCATAGATGA TTGGGACTAT GAAATCTTTA TAACAGGATG GAATGTGGCT
ATTTTTTCGT CGGAAGGAGC TACCGAGAAA AAATTCGGTG TGCAGATAGG ATCTCCTGAA
GTCGTTGTGG TTGATGGGTG GATAAAGATA GCTGTAAAGG GTGAATGGAT TGATTTTCCA
GAAAGCTTCA ATGGCTGGAA ATTGTACCTT ACAACTTGGG ATTACGATGG TGTGGAAAAC
AGGTTCAGGC CTCTTGAAGA GGAACCAAAA GCTTACAGGT TTGGAGGAGG AAACAACACA
GAACCGTACA TAATGGATGA TTTATGGATC GAAATAAAGG AATAA
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| Protein sequence | MGRSFFTFLL ILAVSLFAVS WRDVVLYEIM IDRFNDGDPT NNDQGYGEYD PSDPAKYSGG
DLKGIIDKLD YIRGLGVDGI WITPPVANQW WDPWVNYGGY HGYWARNFKE VDEHFGNIET
YRKLSEEIHR KNMFLIQDIV VNHVGNYFRF KAGKFEINTG SVPTFAPTQF PFNMNDYNDP
KQREMNVYHW TPDITNYNDI HQKLNYQLSG LDDLNTENPM VRSALKDSYG FWIKEVGVDG
FRVDTAMYVP KDFWDDFFFG KDGIMTLKDD FIAFGEAWLT SPPMDDSAEK EIESYFDHGF
NAMLDFPLCE EIRRVLKGGK PTSWLAYRIE RRNQTLEKGL LVTFIDNHDM ERFSRGTDEK
TLRMAVAFLM TLPGIPVIYY GTEQSFEETR ASMFAKGWGS GGKDHFEKGE MYDFIKSAVE
FRKSHTATRY GKVKVLLSNS EGAGLLVYEV KDENETLIVV LNTSNNDKIR TIDGVFPSME
KVFSSDREAR VVVQEKSTVF IVPPKSLTVF KLSSVNKYEK QTTNLTLKTT VNIYEDRVVI
SGETNGKRMY AYIDGLYQTI PEKVNIVDGK YSLSLDLYKM GPGNHFIILK VYGSNPKEVL
YSEEIWFEVS IPTEKLAEVT DPMNDDHGPF GRYKYPLDLT FKRQMDLIGA KVERMGPNLI
VWIKTREITT SWNPPLGFDH VSFQIFLDDP RRKGAEALPF QNYAIDDWDY EIFITGWNVA
IFSSEGATEK KFGVQIGSPE VVVVDGWIKI AVKGEWIDFP ESFNGWKLYL TTWDYDGVEN
RFRPLEEEPK AYRFGGGNNT EPYIMDDLWI EIKE
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