Gene Tpet_0597 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0597 
Symbol 
ID5170916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand- 
Start bp593816 
End bp594826 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content47% 
IMG OID640563105 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001244194 
Protein GI148269734 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.0000000135069 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTAAAA AGCTTCTTTT GATGCTGATT TTAGGCGTGT TTTTAGTGTC GGCTGTGTTC 
GGTGCAAAGT ACACACTGAG ATTTGGACAC GTTCTTGCTC CAGGTGAACC GTACCATCAG 
GCGTTTCTGA AATGGGCCAA GGCAGTTGAG GAGAGAACGA ACGGCGATGT TAGAATTGAA 
GTCTTCCCGA GTTCACAGCT TGGTGTGGAA GAGGACATCA TCGAGCAGAT CAGAATGGGA 
GCGCCTGTGG GATGGAACAC GGACTCTGCA AGGCTTGGAA TGTACGTTAA AGACATCGGC 
GTCATGAACC TTGCATACTT CATCGATTTC ATGGGCGCAA AAACTCCTGA AGAGGCGATG 
GAGGTTCTGA AGAAGATCAA GCAATCTCCA ACAATGCAGA AGTGGTTGAA AGAGTTGGAA 
CAGAAATTCG GTATAAAGGT TCTCTCCTTC TACTGGGTGC AGGGTTACAG ACACTTTGTG 
ACAAACAAAC CCATCAGGGA ACCGGAAGAC CTGAATGGTT TGAGAATCAG AACTCCCGGT 
GCGCCTGCAT GGCAGGAATC CATAAGAGCT CTTGGTGCCA TCCCTGTTGC CGTCAACTTC 
GGAGAGATCT ACACAGCGGT CCAGACGAAA GCGGTCGATG GAGCAGAACT CACTTACGCG 
AATGTTTACA ACGGTGGTCT ATACGAAGTT TTGAAGTACA TGTCTGAAAC GGGACACTTC 
CTTCTCATCA ACTTCGAAAT CGTCAGCGCA GACTGGTTCA ACAGCCTGCC CAAGGAATAT 
CAGAAGATTA TTGAGGAAGA GATTGACAAA GCGGGAATCG AAGTTTCTCT CAAAATCATG 
AAAGAACTCG AAGAAGAATA CAAACAGAAG TGTATTGAAA AGGGTATGAC AGTGATACCA 
GCTTCTGAAA TCGACAAGGA AGCCTTTATG GAAAGGGCAA AACAGGCTTA CAAGAATCTC 
GGTCTTGAGG ATGCTCTCAA CCAGTTGATC AAGGAAGTGA AGGGAGAGTA A
 
Protein sequence
MGKKLLLMLI LGVFLVSAVF GAKYTLRFGH VLAPGEPYHQ AFLKWAKAVE ERTNGDVRIE 
VFPSSQLGVE EDIIEQIRMG APVGWNTDSA RLGMYVKDIG VMNLAYFIDF MGAKTPEEAM 
EVLKKIKQSP TMQKWLKELE QKFGIKVLSF YWVQGYRHFV TNKPIREPED LNGLRIRTPG 
APAWQESIRA LGAIPVAVNF GEIYTAVQTK AVDGAELTYA NVYNGGLYEV LKYMSETGHF 
LLINFEIVSA DWFNSLPKEY QKIIEEEIDK AGIEVSLKIM KELEEEYKQK CIEKGMTVIP 
ASEIDKEAFM ERAKQAYKNL GLEDALNQLI KEVKGE