Gene Tpet_0574 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0574 
Symbol 
ID5170740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp572936 
End bp573697 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content48% 
IMG OID640563081 
Productshikimate dehydrogenase substrate binding subunit 
Protein accessionYP_001244171 
Protein GI148269711 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000629115 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTCT GCATCATAGG GTATCCGGTG AGTCACAGCA TATCACCAAG GCTTTACAAC 
GAGTATTTCA AAAGGGCGGG AATGAACCAC TCGTACGGTA TGGAAGAGAT ACCACCTGAA
TCTTTCGACA CGGAGATAAG AAGGATTCTC GAAGAATACG ATGGTTTCAA CGCGACAATT
CCTCACAAAG AAAGAGTGAT GCGGTACGTC GAACCATCTG AAGATGCGCA GAGAATAAAA
GCCGTGAACT GCGTCTTTCG GGGAAAGGGA TACAACACCG ACTGGGTTGG CGTTGTGAAA
TCGCTCGAGG GTGTAGAGGT GAAAGAACCC GTTGTCGTTG TGGGAGCGGG CGGAGCCGCA
CGTGCTGTGA TCTACGCTCT CCTCCAGATG GGCGTGAAAG ACATCTGGGT GGTGAACAGA
ACGATCGAAA GGGCGAAGGC TCTCGATTTT CCTGTGAAAA TTTTCTCTCT CGATCAGCTC
GACGAGGTTG TGAAAAAGGC GAAGAGTCTC TTCAACACCA CTTCCGTTGG AATGAAGGGA
GAGAAACTGA CCGTTTCCGA AGCTTCTTTG AAAGGTCTGT ATCTTGTTTA CGACGTGGTG
TACTTTGAGA CTCCTCTCGT TTCTGATGCG AAGAGATTGG GAGTGGAACA CGTTGTAAAG
GGAAACCTCA TGTTTTACTA TCAGGCGATG GAGAATCTCA AAATATGGGG AATCTACGAT
GAAAGATCGT TCAAAGAAGT GTTCGAGGAG GTACTGAGAT GA
 
Protein sequence
MKFCIIGYPV SHSISPRLYN EYFKRAGMNH SYGMEEIPPE SFDTEIRRIL EEYDGFNATI 
PHKERVMRYV EPSEDAQRIK AVNCVFRGKG YNTDWVGVVK SLEGVEVKEP VVVVGAGGAA
RAVIYALLQM GVKDIWVVNR TIERAKALDF PVKIFSLDQL DEVVKKAKSL FNTTSVGMKG
EKLTVSEASL KGLYLVYDVV YFETPLVSDA KRLGVEHVVK GNLMFYYQAM ENLKIWGIYD
ERSFKEVFEE VLR