| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0554 |
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| Symbol | |
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| ID | 5170057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 552483 |
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| End bp | 553808 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640563061 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001244151 |
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| Protein GI | 148269691 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0002426 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAGGCT ACCAGATTTA CGTGAGATCT TTCAGGGATG GGAACCTCGA CGGTGTGGGA
GATTTCAGGG GATTGAGAAA CGCTGTTCCC TATTTGAAAG AACTGGGGAT TGACTTTGTT
TGGCTCATGC CCGTTTTTTC CTCTATATCT TTTCACGGGT ACGACGTGGT GGATTTTTAT
TCTTTCAAAG CTGAGTACGG TAGCGAGAGA GAGTTCAAAG AGATGCTCGT AGCATTCCAC
GACAGCGGAA TAAAAGTAGT TCTTGACCTC CCCATCCACC ACACAAGTTT TCTCCACACG
TGGTTCCAAA GGGCGCTGGA GGGAGATCCA CACTACAGAG ATTACTACGT GTGGGCAAAC
AAAGAGACGG ATCTGGATGA AAGAAGAGAG TGGGATGGAG AAAGGATCTG GCATCCGCTG
GAAGATGGTA GGTTCTACAG AGGGCTTTTT GGACCTTTCT CACCCGATCT GAACTATGAC
AATCCGCAGG TATTCGACGA AATGAAAAGA CTGGTCCACC ACCTTCTCAA TATGGGAGTG
GATGGTTTCA GATTCGACGC GGCAAAGCAC ATGAAGGATA CGGTCGAGCA GAACGTTCGT
TTCTGGAAGT ACTTTCTTTC CGATTTGAAA GGCATCTTCC TCGCGGAGAT ATGGGCAGAG
GCCAGAATGG TAGATGAACA CGGCAGAATA TTCGGCTACA TGCTCAACTT TGACACATCT
CACTGTATAA AGGAAGCTGT ATGGAAAGAA AACACAAGAG TTTTGATAGA ATCAATCGAG
AGGGCCCTTG TCGGTAAAGA CTACCTCCCG GTGAATTTCA CTTCGAATCA CGACATGTCA
AGACTCGCAA GCTTTGAAGG AGGCTTCAGC GAAGAAAAGA TCAAACTTTC GATTTCCATT
CTTTTCACTC TCCCGGGAGT TCCTCTCGTG TTCTACGGAG ACGAGCTTGG AATGAAAGGA
GTTTACCAGA AACCAAACAC GGAAGTCGTT CTGGATCCTT TCCCGTGGAA CGAGAATATG
TGTGTTGAGG GACAGACCTT CTGGAAGTGG CCCGCGTACA ACGGGCCTTT CTCCGGCATC
TCTGTGGAAT ACCAGAAGAG AAATCCCGAT TCGATTCTTT CACAAACAAT GAGATGGATG
AGATTCAGAA AAGAAAACCA GTGGATCGAT CGGGCAAAGC TCGAATTTTT GTGCAAAGAG
GACAAGTTCC TTGTGTACAG ACTCTACGGT GATCAGTATT CTCTGAAGGT GTTTCACAAC
CTTTCAGGTG AAGAGGTTGT CTTTGAGGGA GTCCGGATAA GGCCTTACAA AACGGAGGTG
GTTTGA
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| Protein sequence | MIGYQIYVRS FRDGNLDGVG DFRGLRNAVP YLKELGIDFV WLMPVFSSIS FHGYDVVDFY
SFKAEYGSER EFKEMLVAFH DSGIKVVLDL PIHHTSFLHT WFQRALEGDP HYRDYYVWAN
KETDLDERRE WDGERIWHPL EDGRFYRGLF GPFSPDLNYD NPQVFDEMKR LVHHLLNMGV
DGFRFDAAKH MKDTVEQNVR FWKYFLSDLK GIFLAEIWAE ARMVDEHGRI FGYMLNFDTS
HCIKEAVWKE NTRVLIESIE RALVGKDYLP VNFTSNHDMS RLASFEGGFS EEKIKLSISI
LFTLPGVPLV FYGDELGMKG VYQKPNTEVV LDPFPWNENM CVEGQTFWKW PAYNGPFSGI
SVEYQKRNPD SILSQTMRWM RFRKENQWID RAKLEFLCKE DKFLVYRLYG DQYSLKVFHN
LSGEEVVFEG VRIRPYKTEV V
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