| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0465 |
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| Symbol | rplA |
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| ID | 5171024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 458389 |
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| End bp | 459090 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640562969 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_001244065 |
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| Protein GI | 148269605 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00222885 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCGAAGC ACTCCAAGAG GTATCTTGAA GCAAGGAAGT TCGTAGACAG AACGAAATAC
TACGATCTCG ATGAGGCCAT AGAACTTGTT AAAAAAACTG CCACAGCGAA GTTCGATGAA
ACGATAGAAC TCCACATTCA AACTGGAATA GACTACAGGA AACCTGAGCA GCACATCAGA
GGAACTGTTG TCCTTCCACA CGGAACGGGT AAGGAAGTCA GGGTTCTGGT GTTTGCCAAA
GGAGAAGCGG CGAAAGAGGC ATTGGAAGCG GGTGCAGATT ACGTAGGGGC TGAGGATCTG
GTAGAAAAAA TAGAAAAGGA AGGTTTTCTC GATTTCGATG TTGCAATAGC CACGCCCGAT
ATGATGAGAG TAATTGGAAG ACTCGGAAAG ATCTTGGGAC CAAGAGGTTT GATGCCGTCG
CCCAAATCAG GAACGGTAAC TCAGGAAGTA GCGGAAGCGG TTAAAGAATT CAAAAAAGGA
AGAATAGAGG TCAGAACGGA CAAAACTGGG AACATTCACA TACCCGTTGG TAAAAGGAGT
TTTGACAACG AAAAATTGAA GGAAAACATA ATTTCAGCTG TAAGACAGAT CATGCAGATG
AAACCCGCAG GTGTGAAAGG ACAGTTCATT AAAAAAGCGG TTTTGTCTTC TACAATGGGA
CCCGGTATAA AGTTGAATCT TCAGAGCCTG TTGAAAGAGT AA
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| Protein sequence | MPKHSKRYLE ARKFVDRTKY YDLDEAIELV KKTATAKFDE TIELHIQTGI DYRKPEQHIR
GTVVLPHGTG KEVRVLVFAK GEAAKEALEA GADYVGAEDL VEKIEKEGFL DFDVAIATPD
MMRVIGRLGK ILGPRGLMPS PKSGTVTQEV AEAVKEFKKG RIEVRTDKTG NIHIPVGKRS
FDNEKLKENI ISAVRQIMQM KPAGVKGQFI KKAVLSSTMG PGIKLNLQSL LKE
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