| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0414 |
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| Symbol | |
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| ID | 5171180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 399360 |
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| End bp | 401159 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640562913 |
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| Product | recombination factor protein RarA/unknown domain fusion protein |
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| Protein accession | YP_001244014 |
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| Protein GI | 148269554 |
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| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
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| COG ID | [COG2110] Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
[COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000174137 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTATTT CAGAAAAACC CTTGAATGAA CTGCTCAGGC CGAAAGATTT CGAGGATTTC
GTCGGTCAGG ATCATATATT CGGCGATAAA GGGATTCTCC GGCGAACTTT AAAAACAGGC
AACATGTTCT CCTCCATCCT TTATGGACCA CCGGGGTCTG GTAAGACCTC GGTTTTTTCA
CTGCTGAAAA GGTATTTCAA CGGCGAGGTA GTTTATCTGA GCTCCACCGT TCACGGGGTT
TCTGAAATAA AGAACGTTCT CAAAAGAGGA GAACAGCTGA GAAAATACGG AAAAAAACTG
CTTCTTTTTC TCGATGAAAT ACACCGCCTG AACAAAAACC AGCAGATGGT CTTGGTTTCC
CATGTTGAAC GAGGAGACAT CGTACTGGTT GCGACAACAA CTGAAAACCC AAGTTTTGCC
ATCGTACCCG CCCTTCTCTC GAGATGCAGG ATTCTTTATT TCAAAAAACT CTCTGACGAG
GATCTGATGA AGATCTTGAA GAAAGCGACA AGGGTTCTCA AACTCGATCT GGAAGAGACA
GCAGAAAAGG CCATAGTAAA GCACTCCGAA GGAGACGCCA GGAAACTCTT GAACACCCTG
GAGATCGTCC ACCAGGCGTT CAAAAACAAG AGGGCAACTC TTGAAGATCT GGAAACTCTG
CTGGGAAATG TGAGCGGGTA CACGAAGGAA TCACACTACG ATTTCGCTTC AGCCTTTATA
AAGAGTATGA GGGGTAGCGA TCCAAACGCC GCCGTTTACT ACCTCGTCAA GATGATAGAG
ATGGGAGAAG ACCCGCGATT CATAGCACGA AGAATGATCA TATTCGCCAG CGAAGACGTT
GGACTCGCCG ACCCAAACGC TCTACATATC GCCGTTTCGA CCTCCATCGC TGTCGAACAC
GTGGGACTTC CCGAATGCTT GATGAACCTT GTAGAGTGTG CCATCTACCT TTCCCTCGCT
CCCAAGAGCA ATTCTGTTTA TCTTGCAATG AAAAAGGCCC AGGAACTTCT TGTGGAGGAC
GTACCGCTTT TTTTGAGAAA TCCCGTCACC GAAGAAATGA AAAAGCGTGG ATACGGGGAA
GGGTATCTTT ATCCTCATGA TTTCGGCGGC TTTGTGAAAA CGAACTATCT TCCAGAAAAG
TTGAAAGGTG AGGTCATCTT CCAGCCAAAA AGAGTAGGTT TTGAGGAAGA ACTCTTTGAA
AGGCTCAAAC GTCTTTGGCC CGAGAAGTAC GGGGGTGAAA GTATGGCCGA AGTGAGAAAA
GAACTGGAAT ACAAAGGGAA AAAGATCAGA ATCGTAAAGG GAGACATCAC AAGAGAAGAA
GCGGACGCCA TAGTGAACGC GGCGAACGAA TATCTGAAAC ACGGAGGAGG AGTAGCGGGA
GCGATCGTGA GAGCGGGTGG AAGCGTTATT CAGGAGGAAA GCGACAGGAT CGTTCAGGAG
CGTGGAAGAA TTCCGACAGG CGAAGCGGTG GTAACCGGCG CTGGAAAGCT GAAGGCAAAA
TACGTGATTC ACGCTGTGGG ACCCGTTTGG AGAGGAGGCA GTCATGGAGA GGACGAACTC
CTCTACAAAG CAGTTTACAA CGCACTCCTT CGAGCTCACG AACTGAAATT GAAAAGCATC
TCAATGCCTG CCATCAGCAC AGGAATCTTC GGATTTCCGA AAGAAAGAGC GGTGGGAATC
TTTTCAAAGG CAATAAAAGA TTTCATCGAT CAACATCCGG ATACCGCTCT GGAAGAAATC
CGCATATGCA ATATAGACGA GGAAACAACG AAAATTTTCG AAGAAAAGTT CAGCGTTTGA
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| Protein sequence | MSISEKPLNE LLRPKDFEDF VGQDHIFGDK GILRRTLKTG NMFSSILYGP PGSGKTSVFS
LLKRYFNGEV VYLSSTVHGV SEIKNVLKRG EQLRKYGKKL LLFLDEIHRL NKNQQMVLVS
HVERGDIVLV ATTTENPSFA IVPALLSRCR ILYFKKLSDE DLMKILKKAT RVLKLDLEET
AEKAIVKHSE GDARKLLNTL EIVHQAFKNK RATLEDLETL LGNVSGYTKE SHYDFASAFI
KSMRGSDPNA AVYYLVKMIE MGEDPRFIAR RMIIFASEDV GLADPNALHI AVSTSIAVEH
VGLPECLMNL VECAIYLSLA PKSNSVYLAM KKAQELLVED VPLFLRNPVT EEMKKRGYGE
GYLYPHDFGG FVKTNYLPEK LKGEVIFQPK RVGFEEELFE RLKRLWPEKY GGESMAEVRK
ELEYKGKKIR IVKGDITREE ADAIVNAANE YLKHGGGVAG AIVRAGGSVI QEESDRIVQE
RGRIPTGEAV VTGAGKLKAK YVIHAVGPVW RGGSHGEDEL LYKAVYNALL RAHELKLKSI
SMPAISTGIF GFPKERAVGI FSKAIKDFID QHPDTALEEI RICNIDEETT KIFEEKFSV
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