| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0320 |
|---|
| Symbol | |
|---|
| ID | 5171465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 299442 |
|---|
| End bp | 301547 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640562823 |
|---|
| Product | monosaccharide-transporting ATPase |
|---|
| Protein accession | YP_001243925 |
|---|
| Protein GI | 148269465 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAAGC TGGTCATATA CATTCTCCTC GTATTCGGTG CCGTTGTCAT GCTGGGACCT
TTCATCTGGA TGCTGCTCAC CTCCTTCAAA GCACCTTCGG AGGTTCAGCA ATGGCCCCCG
AGCTTCTACA CGAAGAACTT CGCTTTCTCA CGCGACGTGA AAACGATCCT GAAACCTGGT
GTTCAGAGGG TCGCAAAGGG AGTCAGCCTG AGAGAAGCGT ACGCTTTGAA AACGGCCGAA
AAAAATCTGC TCACCATCAC GGTGAACGAC GACCCGTTCC AAAGAGGAAC GATGGTGATC
CCTCTCAAAG GGGCAAGATA CACAACGGAG GTAGATGTTG AAAAAGTCAA AGAACTCTCC
TCTAAATCTC CGGTGGAATT TTCCTGGAAA ACACCAGAAG AATTCTTCGA GCAGTTCTTC
ATACACTACA AGAGTGGTGC GGATCCGTAC CTTCAACGTG CAAAACTGGT GAACGAAATT
CTGAGTTCAG TAGAGGGTGC TCTGCGGACC ATCTCTCAGA TGAATCGATT TGCGGACGTC
AGGATAAAAG ATGAGGAGGA AAAGGAAAGA TTTCTTTCTT TTCTCGAGAC CGTGAGTGGG
GAACTCTCTT CTTTCCAGGA GAAGGTGCTC AGCATGAAAT CGGGTACCAC TCTCGTTCTC
TCCGACGAAG AAGTGGAGAA ACTCTATGAG CTTCTCGATG GTTTACGGCT CGAATACTCT
GGAGACAATC CGCTCGTTCC TGTCTACAGA AAGAATGTGG TCTCTCCTTT CGAAGAGGTG
AAGAGAAACG TCTCCTACTA CCTTGAGGTC AGCGGCTTCT TCCAGAGCGT TCAGAACCTC
GCTGTGGAAA AAGACATCGT CGCCCGCTCG ATGAAAAAAG ATGAGAGAAA AGCTCTCTTT
TTGAAAAAGA TCGGAAACTT CCCCGACAGA GAGCTCGTGG AAAGGCTCCT GGAGGAATCG
GAAAGCCCCG TTGAGGACTA CGTCTCTTTG AAAGAGAAAG AACTCTCGGA GAAACACCAC
GTGGATCTTC TTACCATCGC TTCGGCGAAG CCGGTTGTCT CTTCTCTGAT CTCTCTCGCA
CAGGAAAACG GGATCGAAAC AGAAAACTTC TCTCAAATGG TCGCTGAGAT GGACATCAAA
CTCGCTGAAA GTAGCACCTA CAGAGTGTTG AAGTCGAAAC TCTCCCAGCT TGGTCTGGAT
GAGAAGTTCC TCACCGAAGT GGCCGGTTAT CTCAAAAGCG TTGCGCTCCT CAGAAAGGCC
TACGAAGACG CGATGAGCTC CTGGAAGATT GTGGACGCTC CTGACTTTGT GAAGGAAGTC
CGTGTGAAGG GTGGCGAAGT GATAGAAGTT CTTCTGGAGG GTGTCCCTTC CGTTTTCCTG
AGTGATGAAC CCATCGACTC TGTGAAACTC AGGTTCTCTT TCTCCGAAGT GCTGGCTAAC
ATCTTCCAGA ACTACGTTGA TGCCTGGAAC GCAGCACCCT TCCCAAGGTA CTACTTCAAC
ACGTTTTTTG TGGCGACGAT AACCACTCTG CTCGAGGTGG TTACCGCATC TCTCGCCGCG
TACGCCTTCT CTTGGATGGT CTTTCCCGGA AGAGACTTCA TCTTCGGTCT CTTCCTTGCG
ACCATGATGA TCCCGGGAGA GGTGCTCCTC GTTCCCAACT TCATCACGAT CTCGAAACTC
GGCTGGATTG ACACCTACTA CGCCCTCATA ATTCCCTGGA TCGTCAGTGT CTTCGCGATA
TTCCTTCTGA GACAGCACTT TCTGACCATA CCAAGGGAAC TCTTCGATGC TGCAAAGATA
GACGGATGTT CTCACTGGAG GTTTCTCTGG CAGATGGTGG TGCCTCTCAG CAGGCCTGCC
GTCATCACCT CTGCACTTCT CAAATTCGTC GGAAGCTGGA ACGCGTTCCT GTGGGTCCTC
ATCGTCACAA ACAGCGAAAA GTACAGAACA CTGCCCGTGG GACTCCAGGC GTTCAGTTCA
GACGTGGGAA CTCAGTACAA CCTGCTCATG GCGGCCGCTA CGTTCTCGAT TCTTCCCGTG
GTGATACTCT TCATCTTCAC CCAGAAGTAC TTCATCCAGG GAATCGCGAG GACCGGATTG
AAATGA
|
|---|
| Protein sequence | MKKLVIYILL VFGAVVMLGP FIWMLLTSFK APSEVQQWPP SFYTKNFAFS RDVKTILKPG
VQRVAKGVSL REAYALKTAE KNLLTITVND DPFQRGTMVI PLKGARYTTE VDVEKVKELS
SKSPVEFSWK TPEEFFEQFF IHYKSGADPY LQRAKLVNEI LSSVEGALRT ISQMNRFADV
RIKDEEEKER FLSFLETVSG ELSSFQEKVL SMKSGTTLVL SDEEVEKLYE LLDGLRLEYS
GDNPLVPVYR KNVVSPFEEV KRNVSYYLEV SGFFQSVQNL AVEKDIVARS MKKDERKALF
LKKIGNFPDR ELVERLLEES ESPVEDYVSL KEKELSEKHH VDLLTIASAK PVVSSLISLA
QENGIETENF SQMVAEMDIK LAESSTYRVL KSKLSQLGLD EKFLTEVAGY LKSVALLRKA
YEDAMSSWKI VDAPDFVKEV RVKGGEVIEV LLEGVPSVFL SDEPIDSVKL RFSFSEVLAN
IFQNYVDAWN AAPFPRYYFN TFFVATITTL LEVVTASLAA YAFSWMVFPG RDFIFGLFLA
TMMIPGEVLL VPNFITISKL GWIDTYYALI IPWIVSVFAI FLLRQHFLTI PRELFDAAKI
DGCSHWRFLW QMVVPLSRPA VITSALLKFV GSWNAFLWVL IVTNSEKYRT LPVGLQAFSS
DVGTQYNLLM AAATFSILPV VILFIFTQKY FIQGIARTGL K
|
|---|
| |